Expanded target and cofactor repertoire for the transcriptional activator LysM from Sulfolobus (Q41122520)

27 September 2017

Expanded target and cofactor repertoire for the transcriptional activator LysM from Sulfolobus (English)

1 reference

27 September 2017

4

1 reference

27 September 2017

Ningning Song

1

1 reference

27 September 2017

Trong Nguyen Duc

2

1 reference

27 September 2017

Liesbeth van Oeffelen

3

1 reference

27 September 2017

Eveline Peeters

5

1 reference

27 September 2017

Daniel Charlier

6

1 reference

27 September 2017

25 January 2013

1 reference

27 September 2017

Nucleic Acids Research

1 reference

27 September 2017

41

1 reference

27 September 2017

5

1 reference

27 September 2017

2932-2949

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

27 September 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Global regulation of gene expression by OxyR in an important human opportunistic pathogen

27 September 2017

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Deciphering the transcriptional regulatory logic of amino acid metabolism

27 September 2017

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Parallel evolution of transcriptome architecture during genome reorganization

27 September 2017

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The Lrp family of transcription regulators in archaea

27 September 2017

1 reference

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Transcriptional control by two leucine-responsive regulatory proteins in Halobacterium salinarum R1.

27 September 2017

1 reference

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Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks

27 September 2017

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Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin

27 September 2017

1 reference

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A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability

27 September 2017

1 reference

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Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Interactions between the archaeal transcription repressor FL11 and its coregulators lysine and arginine

27 September 2017

1 reference

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Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Feast/famine regulation by transcription factor FL11 for the survival of the hyperthermophilic archaeon Pyrococcus OT3

27 September 2017

1 reference

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A structural code for discriminating between transcription signals revealed by the feast/famine regulatory protein DM1 in complex with ligands

27 September 2017

1 reference

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Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Mutations and rearrangements in the genome of Sulfolobus solfataricus P2.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Feast/famine regulatory proteins (FFRPs): Escherichia coli Lrp, AsnC and related archaeal transcription factors

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Archaeal transcription and its regulators

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Bioconductor: open software development for computational biology and bioinformatics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Activation of archaeal transcription by recruitment of the TATA-binding protein

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

The Lrp family of transcriptional regulators

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Leucine-induced dissociation of Escherichia coli Lrp hexadecamers to octamers

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

The complete genome of the crenarchaeon Sulfolobus solfataricus P2

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

A new mathematical model for relative quantification in real-time RT-PCR

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Mechanism and regulation of transcription in archaea

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Purification and characterization of Sa-lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Leucine-responsive regulatory protein: a global regulator of gene expression in E. coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Transcription in archaea: similarity to that in eucarya

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

57 Sequencing end-labeled DNA with base-specific chemical cleavages

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Missing contact probing of DNA-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Sequence logos: a new way to display consensus sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Unexpected coregulator range for the global regulator Lrp of Escherichia coli and Proteus mirabilis.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Nanobody-based chromatin immunoprecipitation.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Competitive activation of the Escherichia coli argO gene coding for an arginine exporter by the transcriptional regulators Lrp and ArgP.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus, regulates a gene cluster with a pyruvate ferredoxin oxidoreductase-encoding operon and permease genes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Transcription regulation by feast/famine regulatory proteins, FFRPs, in archaea and eubacteria

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Cooperative binding of the leucine-responsive regulatory protein (Lrp) to DNA.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597687

Camel single-domain antibodies as modular building units in bispecific and bivalent antibody constructs

19 August 2018

1 reference

12 December 2020

A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes

1 reference

12 December 2020

Ss-LrpB, a novel Lrp-like regulator of Sulfolobus solfataricus P2, binds cooperatively to three conserved targets in its own control region

1 reference

12 December 2020

Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector

1 reference

12 December 2020

The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators

1 reference

12 December 2020

Ss-LrpB from Sulfolobus solfataricus condenses about 100 base pairs of its own operator DNA into globular nucleoprotein complexes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKT021

1 reference

release_uq7grfzmrbfmjjlcaw74bvmb54

27 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/uq7grfzmrbfmjjlcaw74bvmb54

24 November 2022

mapped directly with Wikidata item

1 reference

27 September 2017

PubMed publication ID

23355617

1 reference