Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network. (Q41228232)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28898266%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

title

Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network (English)

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29 March 2020

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29 March 2020

David S Lawrie

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29 March 2020

author name string

Konstantin N Kozlov

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29 March 2020

Ivan V Kulakovskiy

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29 March 2020

Asif Zubair

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29 March 2020

Paul Marjoram

5

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29 March 2020

Sergey V Nuzhdin

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29 March 2020

Maria G Samsonova

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language of work or name

English

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publication date

12 September 2017

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29 March 2020

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29 March 2020

volume

12

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issue

9

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29 March 2020

page(s)

e0184657

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Creative Commons Attribution 4.0 International

29 March 2020

copyright license

start time

12 September 2017

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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28 September 2017

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Precise developmental gene expression arises from globally stochastic transcriptional activity

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition

28 September 2017

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The Drosophila gap gene network is composed of two parallel toggle switches

28 September 2017

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Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules

28 September 2017

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The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding

28 September 2017

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REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

28 September 2017

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28 September 2017

The gap gene network.

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Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

28 September 2017

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Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials

28 September 2017

1 reference

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Artificial selection on egg size perturbs early pattern formation in Drosophila melanogaster.

28 September 2017

1 reference

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Modelling the Drosophila embryo

28 September 2017

1 reference

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High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

28 September 2017

1 reference

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Motif discovery and motif finding from genome-mapped DNase footprint data

28 September 2017

1 reference

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Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila

28 September 2017

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FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution

28 September 2017

1 reference

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Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

28 September 2017

1 reference

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Positive and negative selection on noncoding DNA in Drosophila simulans

28 September 2017

1 reference

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Data and theory point to mainly additive genetic variance for complex traits

28 September 2017

1 reference

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Characterization of the Drosophila segment determination morphome.

28 September 2017

1 reference

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Evolution of genes and genomes on the Drosophila phylogeny

28 September 2017

1 reference

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Canalization of segmentation and its evolution in Drosophila.

28 September 2017

1 reference

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Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

28 September 2017

1 reference

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Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5595321

Transcriptional control in the segmentation gene network of Drosophila

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5595321

On schemes of combinatorial transcription logic

28 September 2017

1 reference

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Abundant raw material for cis-regulatory evolution in humans

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5595321

Specificity, free energy and information content in protein-DNA interactions

28 September 2017

1 reference

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Effects of single P-element insertions on bristle number and viability in Drosophila melanogaster

28 September 2017

1 reference

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Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster

28 September 2017

1 reference

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Predicting expression patterns from regulatory sequence in Drosophila segmentation.

17 June 2018

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Adaptive evolution of non-coding DNA in Drosophila

19 August 2018

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Dynamic control of positional information in the early Drosophila embryo.

19 August 2018

1 reference

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10.1371/JOURNAL.PONE.0184657

19 August 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28898266%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28898266%20AND%20SRC:MED&resulttype=core&format=json

29 March 2020

PubMed publication ID

28898266

1 reference