HHsvm: fast and accurate classification of profile-profile matches identified by HHsearch. (Q41809975)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

title

HHsvm: fast and accurate classification of profile-profile matches identified by HHsearch (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1

Mensur Dlakić

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

author name string

Mensur Dlakić

series ordinal

1

1 reference

12 October 2017

language of work or name

English

0 references

publication date

22 September 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

volume

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

issue

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

page(s)

3071-3076

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

8 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

The Pfam protein families database

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Data growth and its impact on the SCOP database: new developments

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

The HHpred interactive server for protein homology detection and structure prediction

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Protein homology detection by HMM-HMM comparison

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Detecting distant homology with Meta-BASIC.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

A comparison of profile hidden Markov model procedures for remote homology detection

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Protein secondary structure prediction based on position-specific scoring matrices

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Twilight zone of protein sequence alignments

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Hidden Markov models for detecting remote protein homologies

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Profile hidden Markov models

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Improved tools for biological sequence comparison

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Basic local alignment search tool

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Sequence logos: a new way to display consensus sequences

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Prediction of protein functional residues from sequence by probability density estimation.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Visualizing profile-profile alignment: pairwise HMM logos

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913662

COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19773335

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP555

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/Dlakic09

8 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19773335%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

PubMed publication ID

19773335

1 reference