DNA looping by FokI: the impact of twisting and bending rigidity on protein-induced looping dynamics. (Q42052270)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

DNA looping by FokI: the impact of twisting and bending rigidity on protein-induced looping dynamics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

author name string

David A Rusling

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

Christian Pernstich

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

Ineke Brouwer

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

Stephen E Halford

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

Gijs J L Wuite

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

publication date

28 February 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

volume

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

page(s)

4988-4997

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

24 January 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Illuminating the reaction pathway of the FokI restriction endonuclease by fluorescence resonance energy transfer

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Single-molecule approaches to probe the structure, kinetics, and thermodynamics of nucleoprotein complexes that regulate transcription

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Dissecting protein-induced DNA looping dynamics in real time

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

First-principles calculation of DNA looping in tethered particle experiments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Concentration and length dependence of DNA looping in transcriptional regulation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Biology, one molecule at a time

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Theoretical aspects of the biological catch bond

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Recent advances in optical tweezers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Dynamics and consequences of DNA looping by the FokI restriction endonuclease

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

DNA looping: the consequences and its control.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Protein assembly and DNA looping by the FokI restriction endonuclease

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

A gamut of loops: meandering DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Gapped DNA and cyclization of short DNA fragments.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Near-field-magnetic-tweezer manipulation of single DNA molecules

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Enzyme-mediated DNA looping

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Structural transitions and elasticity from torque measurements on DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

How the Bfi I restriction enzyme uses one active site to cut two DNA strands

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

High-throughput approach for detection of DNA bending and flexibility based on cyclization

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

FokI dimerization is required for DNA cleavage

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Structure of FokI has implications for DNA cleavage

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Extension of torsionally stressed DNA by external force

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

NaeI endonuclease binding to pBR322 DNA induces looping

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Helical repeat of DNA in solution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Effect of supercoiling on formation of protein-mediated DNA loops.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367208

Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22373924

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22373924

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22373924

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS184

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

22373924

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22373924%20AND%20SRC:MED&resulttype=core&format=json