CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments (Q42107793)

16 October 2017

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments (English)

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16 October 2017

Lakshmi Kuttippurathu

1

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16 October 2017

Michael Hsing

2

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16 October 2017

Yongchao Liu

3

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16 October 2017

Bertil Schmidt

4

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16 October 2017

Douglas L Maskell

5

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16 October 2017

Kyungjoon Lee

6

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16 October 2017

Aibin He

7

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16 October 2017

William T Pu

8

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16 October 2017

Sek Won Kong

9

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16 October 2017

language of work or name

English

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publication date

23 December 2010

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16 October 2017

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16 October 2017

27

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16 October 2017

5

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16 October 2017

715-717

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GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Deep and wide digging for binding motifs in ChIP-Seq data.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Tmod: toolbox of motif discovery

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Discovery of regulatory elements is improved by a discriminatory approach

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Insights from genomic profiling of transcription factors

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

RSAT: regulatory sequence analysis tools

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

STAMP: a web tool for exploring DNA-binding motif similarities

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Using GOstats to test gene lists for GO term association

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Assessing computational tools for the discovery of transcription factor binding sites

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Applied bioinformatics for the identification of regulatory elements

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Statistical significance for genomewide studies

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

TRANSFAC: transcriptional regulation, from patterns to profiles

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3105477

10.1093/BIOINFORMATICS/BTQ707

29 May 2018

Identifiers

DOI

1 reference

journals/bioinformatics/KuttippurathuHLSMLHPK11

16 October 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

1 reference