Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition. (Q42256360)

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14 March 2020

title

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition (English)

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14 March 2020

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1

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14 March 2020

Johanna Gassler

2

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14 March 2020

Hugo B Brandão

4

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14 March 2020

Nezar Abdennur

6

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14 March 2020

Sergey Razin

7

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14 March 2020

author name string

Maxim Imakaev

3

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14 March 2020

Sergey V Ulianov

5

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14 March 2020

Leonid A Mirny

8

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14 March 2020

Kikuë Tachibana-Konwalski

9

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14 March 2020

language of work or name

English

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publication date

29 March 2017

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14 March 2020

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14 March 2020

volume

544

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14 March 2020

issue

7648

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14 March 2020

page(s)

110-114

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describes a project that uses

14 March 2020

ImageJ

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5639698/fullTextXML

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nature21711

0 references

cites work

Formation of Chromosomal Domains by Loop Extrusion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Insulator dysfunction and oncogene activation in IDH mutant gliomas

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Condensin-driven remodelling of X chromosome topology during dosage compensation.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Reprogramming the genome to totipotency in mouse embryos

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Organization of the mitotic chromosome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Physical tethering and volume exclusion determine higher-order genome organization in budding yeast

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Spatial partitioning of the regulatory landscape of the X-inactivation centre

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Topological domains in mammalian genomes identified by analysis of chromatin interactions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Rec8-containing cohesin maintains bivalents without turnover during the growing phase of mouse oocytes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Chromatin configuration and transcriptional control in human and mouse oocytes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Differential H4 acetylation of paternal and maternal chromatin precedes DNA replication and differential transcriptional activity in pronuclei of 1-cell mouse embryos.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

DNA packaging and organization in mammalian spermatozoa: comparison with somatic cells

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Formation of new chromatin domains determines pathogenicity of genomic duplications

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Differential transcriptional activity associated with chromatin configuration in fully grown mouse germinal vesicle oocytes.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5639698

Global identification of yeast chromosome interactions using Genome conformation capture

17 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Massively multiplex single-cell Hi-C.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Two independent modes of chromosome organization are revealed by cohesin removal

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Chromatin architecture reorganization during stem cell differentiation.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

A high-resolution map of the three-dimensional chromatin interactome in human cells

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Cohesin-mediated interactions organize chromosomal domain architecture

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Global reorganization of the nuclear landscape in senescent cells

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21711

7 January 2021

Identifiers

DOI

10.1038/NATURE21711

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28355183%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

14 March 2020

0 references

1 reference

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14 March 2020

PubMed publication ID

28355183

1 reference