Using stable isotope probing to obtain a targeted metatranscriptome of aerobic methanotrophs in lake sediment (Q42263316)

19 October 2017

Using stable isotope probing to obtain a targeted metatranscriptome of aerobic methanotrophs in lake sediment (English)

1 reference

19 October 2017

0 references

1 reference

1 reference

3

1 reference

19 October 2017

2

Bianca Pommerenke

1 reference

19 October 2017

Marc G Dumont

1

1 reference

19 October 2017

22 July 2013

1 reference

Environmental Microbiology Reports

19 October 2017

1 reference

19 October 2017

5

1 reference

19 October 2017

5

1 reference

19 October 2017

757-764

1 reference

PubMed ID

24115627

describes a project that uses

19 October 2017

1 reference

Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Complete sequence analysis of two methanotroph-specific repABC-containing plasmids from Methylocystis sp. strain SC2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Stable isotope probing - linking microbial identity to function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Microbial community gene expression in ocean surface waters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Integrative analysis of environmental sequences using MEGAN4

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

High-resolution metagenomics targets specific functional types in complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Methane monooxygenase gene expression mediated by methanobactin in the presence of mineral copper sources.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Environmental transcription of mmoX by methane-oxidizing Proteobacteria in a subarctic Palsa Peatland

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part I: Transcriptomic Study

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Sizing up metatranscriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Molecular biology and regulation of methane monooxygenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic-anoxic interface in a flooded paddy soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Methanotrophic bacteria in oilsands tailings ponds of northern Alberta

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Methanotrophs and copper.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Surveying N2O-producing pathways in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Metabolic aspects of aerobic obligate methanotrophy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Cofactor-dependent pathways of formaldehyde oxidation in methylotrophic bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

Assimilation of acetate by the putative atmospheric methane oxidizers belonging to the USCα clade

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1758-2229.12078

21 January 2018

Identifiers

DOI

10.1111/1758-2229.12078

1 reference

release_gjf6soucjfhxrogsut4yvq3xhe

19 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gjf6soucjfhxrogsut4yvq3xhe

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

24115627

1 reference

PubMed ID

24115627