Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing (Q42776319)

7 November 2017

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing (English)

1 reference

7 November 2017

0 references

12

1 reference

7 November 2017

13

1 reference

7 November 2017

14

1 reference

7 November 2017

15

1 reference

7 November 2017

8

Kim-Anh Lê Cao

1 reference

7 November 2017

Tommaso Leonardi

4

0 references

Giovanni Bussotti

Giovanni Bussotti

3

0 references

Michael B. Clark

Michael B Clark

1

0 references

Joanna Crawford

Joanna Crawford

6

0 references

Gethin Thomas

Gethin P Thomas

9

0 references

author name string

Tim R Mercer

2

1 reference

7 November 2017

Katelin R Haynes

5

1 reference

7 November 2017

Marion E Brunck

7

1 reference

7 November 2017

Wendy Y Chen

10

1 reference

7 November 2017

Ryan J Taft

11

1 reference

7 November 2017

9 March 2015

1 reference

7 November 2017

1 reference

7 November 2017

12

1 reference

7 November 2017

4

1 reference

7 November 2017

339-342

1 reference

https://scigraph.springernature.com/pub.10.1038/nmeth.3321

7 November 2017

0 references

cites work

The reality of pervasive transcription

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Genome-wide transcription and the implications for genomic organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Landscape of transcription in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Synthetic spike-in standards for RNA-seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Proposed methods for testing and selecting the ERCC external RNA controls

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Biases in Illumina transcriptome sequencing caused by random hexamer priming

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Improving RNA-Seq expression estimates by correcting for fragment bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

GENCODE: the reference human genome annotation for The ENCODE Project

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

lncRNAdb: a reference database for long noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Pfam: the protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Alternative splicing and evolution: diversification, exon definition and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

A high-resolution map of human evolutionary constraint using 29 mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

A promoter-level mammalian expression atlas

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

An atlas of active enhancers across human cell types and tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Integrative analysis of 111 reference human epigenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Genome-wide discovery of human splicing branchpoints

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

RefSeq: an update on mammalian reference sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

SSAHA: a fast search method for large DNA databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Next-generation transcriptome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

STAR: ultrafast universal RNA-seq aligner

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

HTSeq--a Python framework to work with high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Aligning multiple genomic sequences with the threaded blockset aligner

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

Detection of nonneutral substitution rates on mammalian phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

dbSNP: the NCBI database of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

The Human Gene Mutation Database: 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3321

21 January 2018

Identifiers

DOI

10.1038/NMETH.3321

1 reference

7 November 2017

1 reference