GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization (Q43713406)

26 November 2017

title

GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization (English)

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26 November 2017

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1

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26 November 2017

Ming-Hsin Tsai

2

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26 November 2017

Feng-Chi Chen

series ordinal

3

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26 November 2017

Chao A Hsiung

series ordinal

4

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26 November 2017

language of work or name

English

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publication date

4 May 2012

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26 November 2017

number of pages

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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26 November 2017

volume

28

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26 November 2017

issue

13

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26 November 2017

page(s)

1752-1758

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

26 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

BioMet Toolbox: genome-wide analysis of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Genome-scale models of bacterial metabolism: reconstruction and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

FBA-SimVis: interactive visualization of constraint-based metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

High-throughput generation, optimization and analysis of genome-scale metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

VANTED: a system for advanced data analysis and visualization in the context of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Structural and functional analysis of cellular networks with CellNetAnalyzer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

MrBac: a web server for draft metabolic network reconstructions for bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Genome-scale reconstruction of the metabolic network in Yersinia pestis, strain 91001.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

OptFlux: an open-source software platform for in silico metabolic engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Integrated network reconstruction, visualization and analysis using YANAsquare.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

Acorn: a grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

A protocol for generating a high-quality genome-scale metabolic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

The Systems Biology Research Tool: evolvable open-source software

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS267

10.1093/BIOINFORMATICS/BTS267

21 January 2018

Identifiers

DOI

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journals/bioinformatics/LiaoTCH12

26 November 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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