Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation. (Q44024204)

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title

Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation (English)

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2

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Harmen van de Werken

3

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Wouter de Laat

5

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author name string

Erik Splinter

1

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Petra Klous

4

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publication date

17 May 2012

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volume

58

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issue

3

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page(s)

221-230

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Capturing chromosome conformation

1 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Looping and interaction between hypersensitive sites in the active beta-globin locus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

An oestrogen-receptor-α-bound human chromatin interactome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

A decade of 3C technologies: insights into nuclear organization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

An evaluation of 3C-based methods to capture DNA interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Action at a distance: DNA-looping and initiation of transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Integrative genomics viewer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Genome organization influences partner selection for chromosomal rearrangements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Circos: an information aesthetic for comparative genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Global chromatin domain organization of the Drosophila genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Evaluating genome-scale approaches to eukaryotic DNA replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Glucocorticoid receptor activation of the Ciz1-Lcn2 locus by long range interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Interchromosomal association and gene regulation in trans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Genomic gene clustering analysis of pathways in eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Evidence for co-evolution of gene order and recombination rate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.04.009

10.1016/J.YMETH.2012.04.009

7 January 2021

Identifiers

DOI

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