Ribosome profiling: new views of translation, from single codons to genome scale (Q44759418)

6 December 2017

Ribosome profiling: new views of translation, from single codons to genome scale (English)

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6 December 2017

Nicholas T Ingolia

1

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6 December 2017

28 January 2014

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6 December 2017

Nature Reviews Genetics

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6 December 2017

15

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6 December 2017

3

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6 December 2017

205-213

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https://scigraph.springernature.com/pub.10.1038/nrg3645

6 December 2017

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cites work

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21 January 2018

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 January 2018

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Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray

21 January 2018

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Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

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Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA

21 January 2018

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Polypeptide Chain Initiation: Nucleotide Sequences of the Three Ribosomal Binding Sites in Bacteriophage R17 RNA

21 January 2018

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Differential expression analysis for sequence count data

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Assessing gene-level translational control from ribosome profiling

21 January 2018

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GWIPS-viz: development of a ribo-seq genome browser

21 January 2018

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

21 January 2018

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Rate-limiting steps in yeast protein translation

21 January 2018

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Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing.

21 January 2018

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Observation of dually decoded regions of the human genome using ribosome profiling data

21 January 2018

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High-resolution view of the yeast meiotic program revealed by ribosome profiling

21 January 2018

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Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

21 January 2018

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

21 January 2018

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Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

21 January 2018

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Regulation of translation initiation in eukaryotes: mechanisms and biological targets

21 January 2018

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Leucine-tRNA initiates at CUG start codons for protein synthesis and presentation by MHC class I

21 January 2018

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Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

21 January 2018

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Amino termini of many yeast proteins map to downstream start codons

21 January 2018

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Extensive transcriptional heterogeneity revealed by isoform profiling

21 January 2018

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New modes of translational control in development, behavior, and disease

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Decoding human cytomegalovirus

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Chemoproteomic discovery of cysteine-containing human short open reading frames.

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Peptidomic discovery of short open reading frame-encoded peptides in human cells.

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Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

21 January 2018

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lincRNAs: genomics, evolution, and mechanisms

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The evolutionary consequences of erroneous protein synthesis.

21 January 2018

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Proto-genes and de novo gene birth

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Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

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Synonymous but not the same: the causes and consequences of codon bias

21 January 2018

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The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

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Balanced codon usage optimizes eukaryotic translational efficiency

21 January 2018

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Wobble base-pairing slows in vivo translation elongation in metazoans

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Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells

21 January 2018

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An evolutionarily conserved mechanism for controlling the efficiency of protein translation

21 January 2018

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Nascent peptides that block protein synthesis in bacteria

21 January 2018

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Positively charged residues are the major determinants of ribosomal velocity

21 January 2018

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Arrest peptides: cis-acting modulators of translation.

21 January 2018

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The ribosome as a hub for protein quality control

21 January 2018

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Widespread regulation of translation by elongation pausing in heat shock

21 January 2018

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Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress

21 January 2018

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Cotranslational response to proteotoxic stress by elongation pausing of ribosomes

21 January 2018

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Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo

21 January 2018

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Monitoring cotranslational protein folding in mammalian cells at codon resolution

21 January 2018

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Translational regulation of gene expression during conditions of cell stress

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Spatially restricting gene expression by local translation at synapses

21 January 2018

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Endoplasmic reticulum stress and the inflammatory basis of metabolic disease

21 January 2018

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A unifying model for mTORC1-mediated regulation of mRNA translation.

21 January 2018

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The translational landscape of mTOR signalling steers cancer initiation and metastasis

21 January 2018

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LIN28A is a suppressor of ER-associated translation in embryonic stem cells

21 January 2018

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Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

21 January 2018

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The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

21 January 2018

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Mammalian microRNAs predominantly act to decrease target mRNA levels

21 January 2018

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Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

21 January 2018

1 reference

Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets

21 January 2018

1 reference

A translational profiling approach for the molecular characterization of CNS cell types

21 January 2018

1 reference

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

21 January 2018

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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

21 January 2018

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Ribosome pausing and stacking during translation of a eukaryotic mRNA.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24468696

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG3645

1 reference

PubMed ID

24468696

Dimensions Publication ID

6 December 2017

0 references

1 reference

PubMed ID

24468696