Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif (Q47613097)

4 February 2018

title

Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif (English)

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4 February 2018

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2

Helen M Berman

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4 February 2018

William A McLaughlin

1

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4 February 2018

language of work or name

English

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publication date

1 June 2003

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4 February 2018

Journal of Molecular Biology

number of pages

13

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based on heuristic

inferred from page(s)

published in

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4 February 2018

volume

330

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4 February 2018

issue

1

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4 February 2018

page(s)

43-55

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4 February 2018

DNA recognition by proteins with the helix-turn-helix motif

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Zinc proteins: enzymes, storage proteins, transcription factors, and replication proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

The helix-loop-helix domain: a common motif for bristles, muscles and sex.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

The beta-ribbon DNA recognition motif

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Transcription factors: structural families and principles of DNA recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structural classification of HTH DNA-binding domains and protein-DNA interaction modes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structure and function of DNA-binding proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Classification of multi-helical DNA-binding domains and application to predict the DBD structures of sigma factor, LysR, OmpR/PhoB, CENP-B, Rapl, and Xy1S/Ada/AraC.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

CATH--a hierarchic classification of protein domain structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

SCOP: a structural classification of proteins database

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Parser for protein folding units

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

SSAP: sequential structure alignment program for protein structure comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Homeodomain-type DNA recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

7 January 2021

Winged helix proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Improved detection of helix-turn-helix DNA-binding motifs in protein sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Molecular evolution of helix-turn-helix proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

DNA-binding proteins and evolution of transcription regulation in the archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structural genomics: beyond the human genome project

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Induction of Decision Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Automated discovery of structural signatures of protein fold and function.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Predicting protein function from structure: unique structural features of proteases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Clustering of highly homologous sequences to reduce the size of large protein databases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

DNA recognition and superstructure formation by helix-turn-helix proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structural studies of the engrailed homeodomain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Iterative partial equalization of orbital electronegativity—a rapid access to atomic charges

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the DNA-binding domain of Mbp1, a transcription factor important in cell-cycle control of DNA synthesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the Xrcc4 DNA repair protein and implications for end joining

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the transcription activator BmrR bound to DNA and a drug

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of MtaN, a global multidrug transporter gene activator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

RASMOL: biomolecular graphics for all

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

High-quality protein knowledge resource: SWISS-PROT and TrEMBL.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the breakage-reunion domain of DNA gyrase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the conserved subdomain of human protein SRP54M at 2.1 A resolution: evidence for the mechanism of signal peptide binding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Solution structure of the cellular factor BAF responsible for protecting retroviral DNA from autointegration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structure of the multimodular endonuclease FokI bound to DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Methionine aminopeptidase-2 regulates human mesothelioma cell survival: role of Bcl-2 expression and telomerase activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Affinity chromatography, substrate/product specificity, and amino acid sequence analysis of an isoflavone O-methyltransferase from alfalfa (Medicago sativa L.)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Binding of the bacteriophage T4 transcriptional activator, MotA, to T4 middle promoter DNA: evidence for both major and minor groove contacts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the signal sequence binding subunit of the signal recognition particle

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Recognition of cognate transfer RNA by the 30S ribosomal subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of a conserved ribosomal protein-RNA complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of yeast Esa1 suggests a unified mechanism for catalysis and substrate binding by histone acetyltransferases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Distribution of acetylated histones resulting from Gal4-VP16 recruitment of SAGA and NuA4 complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Histone acetylation and transcriptional regulatory mechanisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Global Efforts in Structural Genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Identification of homology in protein structure classification.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Database resources of the National Center for Biotechnology Information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

PROMOTIF--a program to identify and analyze structural motifs in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Automated analysis of interatomic contacts in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

The high-resolution crystal structure of the molybdate-dependent transcriptional regulator (ModE) from Escherichia coli: a novel combination of domain folds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Crystal structure of the cyanobacterial metallothionein repressor SmtB: a model for metalloregulatory proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900532-1

10.1016/S0022-2836(03)00532-1

7 January 2021

Identifiers

DOI

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4 February 2018

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4 February 2018