What are we missing about marine invasions? Filling in the gaps with evolutionary genomics (Q56380370)

2

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M. F. Richardson

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C. K. Tepolt

4

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L. A. Rollins

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S. R. Palumbi

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A. D. Miller

maintained by WikiProject

7

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language of work or name

1 reference

7 September 2016

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published in

Marine Biology

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volume

163

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issue

10

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WikiProject Invasion Biology

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cites work

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21 January 2018

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21 January 2018

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Induced spawning and culture techniques for the invasive ascidian Didemnum vexillum (Kott, 2002)

21 January 2018

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A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

21 January 2018

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Controlling false discoveries in genome scans for selection

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Predicting the probability of outbreeding depression.

21 January 2018

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Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

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Genome-wide approaches to the study of adaptive gene expression evolution: systematic studies of evolutionary adaptations involving gene expression will allow many fundamental questions in evolutionary biology to be addressed

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Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

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DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)

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Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

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Cryptic invasions of the crab Carcinus detected by molecular phylogeography

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21 January 2018

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Multiple introductions and invasion pathways for the invasive ctenophore Mnemiopsis leidyi in Eurasia

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RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snail Chlorostoma funebralis

21 January 2018

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Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate

21 January 2018

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Ecological and evolutionary consequences of coastal invasions

21 January 2018

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Robust identification of local adaptation from allele frequencies

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Population genomic evidence for adaptive differentiation in the Baltic Sea herring

21 January 2018

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Detection of epigenetic variations in the protoplast-derived germlings of Ulva reticulata using methylation sensitive amplification polymorphism (MSAP).

21 January 2018

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Invasive alien Crustacea: dispersal, establishment, impact and control

21 January 2018

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Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming

21 January 2018

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The spatial spread of invasions: new developments in theory and evidence

21 January 2018

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Key Questions on the Role of Phenotypic Plasticity in Eco-Evolutionary Dynamics

21 January 2018

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Genetic population structure and contemporary dispersal patterns of a recent European invader, the Chinese mitten crab, Eriocheir sinensis

21 January 2018

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Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species.

21 January 2018

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Genetic consequences of climatic oscillations in the Quaternary

21 January 2018

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Mechanisms for the prevention of marine bioinvasions for better biosecurity

21 January 2018

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Origin of the antitropical distribution pattern in marine mussels ( Mytilus spp.): routes and timing of transequatorial migration

21 January 2018

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Genetic analysis along an invasion pathway reveals endemic cryptic taxa, but a single species with little population structure in the introduced range

21 January 2018

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Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

21 January 2018

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Detecting genetic responses to environmental change

21 January 2018

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Phenotypic plasticity in two marine snails: constraints superseding life history

21 January 2018

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Transcriptome changes in Eriocheir sinensis megalopae after desalination provide insights into osmoregulation and stress adaption in larvae

21 January 2018

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Genetic variation in life-history reaction norms in a marine fish.

21 January 2018

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Targeted capture in evolutionary and ecological genomics.

21 January 2018

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Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

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Genomic divergence between the migratory and stationary ecotypes of Atlantic cod.

21 January 2018

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21 January 2018

Ecological epigenetics

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Molecular genetics and genomics generate new insights into invertebrate pest invasions

21 January 2018

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The Fate of Mutations Surfing on the Wave of a Range Expansion

21 January 2018

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PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment.

21 January 2018

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Fishing for divergence in a sea of connectivity: The utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera.

21 January 2018

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Shape variation in the least killifish: ecological associations of phenotypic variation and the effects of a common garden

21 January 2018

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Gene expression analysis for the identification of selection and local adaptation in fishes

21 January 2018

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Evolutionary genetics of invasive species

21 January 2018

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De novo assembly of a transcriptome for Calanus finmarchicus (Crustacea, Copepoda)--the dominant zooplankter of the North Atlantic Ocean

21 January 2018

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Marine introductions in the Southern Ocean: an unrecognised hazard to biodiversity

21 January 2018

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Transcriptome analysis and discovery of genes involved in immune pathways from hepatopancreas of microbial challenged mitten crab Eriocheir sinensis

21 January 2018

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Transcriptome sequencing revealed the genes and pathways involved in salinity stress of Chinese mitten crab, Eriocheir sinensis

21 January 2018

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DNA methylation is associated with expression level changes of galectin gene in mantle wound healing process of pearl oyster, Pinctada fucata

21 January 2018

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Patterns of DNA methylation throughout a range expansion of an introduced songbird

21 January 2018

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Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus).

21 January 2018

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RNA-seq differential expression studies: more sequence or more replication?

21 January 2018

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Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus).

21 January 2018

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Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

21 January 2018

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Rapid increase in dispersal during range expansion in the invasive ladybird Harmonia axyridis.

21 January 2018

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Genome scans for the contemporary response to selection in quantitative traits

21 January 2018

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Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

21 January 2018

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Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq

21 January 2018

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Transcriptome analysis of Portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation

21 January 2018

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Target-enrichment strategies for next-generation sequencing

21 January 2018

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DNA methylation: A source of random variation in natural populations.

21 January 2018

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Epigenetics and evolution

21 January 2018

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Population genomics of rapid adaptation by soft selective sweeps.

21 January 2018

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Epigenomics in marine fishes

21 January 2018

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Contrasting Frequencies and Effects of cis- and trans-Regulatory Mutations Affecting Gene Expression

21 January 2018

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Polymerase chain reaction-single strand conformation polymorphism analyses of nuclear and chloroplast DNA provide evidence for recombination, multiple introductions and nascent speciation in the Caulerpa taxifolia complex

21 January 2018

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Completing the human genome: the progress and challenge of satellite DNA assembly

21 January 2018

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Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius).

21 January 2018

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Phylogenetic analyses reveal extensive cryptic speciation and host specialization in an economically important mite taxon

21 January 2018

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Assessing the global threat of invasive species to marine biodiversity

21 January 2018

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RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues.

21 January 2018

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Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes

21 January 2018

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Epigenetic reprogramming in mammals

21 January 2018

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Applications of next-generation sequencing technologies in functional genomics

21 January 2018

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A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

21 January 2018

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Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

21 January 2018

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Classification of non-indigenous species based on their impacts: considerations for application in marine management

21 January 2018

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MEDITERRANEAN CAULERPA TAXIFOLIA AND C. MEXICANA (CHLOROPHYTA) ARE NOT CONSPECIFIC

21 January 2018

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Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Beyond FST: Analysis of population genetic data for conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

The Biology of Invasions: The Genetic Adaptation Paradox

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Evolutionary change during experimental ocean acidification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Invasion and the evolution of speed in toads

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Update on the environmental and economic costs associated with alien-invasive species in the United States

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Agricultural applications of insect ecological genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Asymmetric dispersal allows an upstream region to control population structure throughout a species' range

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Adaptation – not by sweeps alone

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Demystifying the RAD fad.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Epigenetics and plant evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

A practical guide to environmental association analysis in landscape genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world's most notorious marine invader, Mnemiopsis leidyi (Ctenophora).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Evolutionary Significance of Epigenetic Variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

De Novo Assembly and Characterization of the Invasive Northern Pacific Seastar Transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Multiple dispersal vectors drive range expansion in an invasive marine species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

5-Methylcytosine as an Endogenous Mutagen in the Human LDL Receptor and p53 Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

A genetic perspective on rapid evolution in cane toads (Rhinella marina).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Diluting the founder effect: cryptic invasions expand a marine invader's range

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Paradox lost: genetic diversity and the success of aquatic invasions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

A global invader at home: population structure of the green crab, Carcinus maenas, in Europe

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Comparative studies of gene expression and the evolution of gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Target capture and massive sequencing of genes transcribed in Mytilus galloprovincialis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genome-wide detection and characterization of positive selection in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Comparison of custom capture for targeted next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Local adaptation in marine invertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Local selection and latitudinal variation in a marine predator-prey interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Ecological and evolutionary insights from species invasions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Evaluating the performance of selection scans to detect selective sweeps in domestic dogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Epigenetic Variation May Compensate for Decreased Genetic Variation with Introductions: A Case Study Using House Sparrows (Passer domesticus) on Two Continents

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Detection and removal of PCR duplicates in population genomic ddRAD studies by addition of a degenerate base region (DBR) in sequencing adapters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genetic isolation by environment or distance: which pattern of gene flow is most common?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Construction of a high-density genetic map and mapping of a sex-linked locus for the brown alga Undaria pinnatifida (Phaeophyceae) based on large scale marker development by specific length amplified fragment (SLAF) sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

De novo transcriptome analysis of the gametophyte of Undaria pinnatifida (Phaeophyceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

The more pieces, the better the puzzle: sperm concentration increases gametic compatibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

An evolutionary process that assembles phenotypes through space rather than through time

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Nonmethylated transposable elements and methylated genes in a chordate genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Draft genome of the Chinese mitten crab, Eriocheir sinensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Stick insect genomes reveal natural selection's role in parallel speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Zoogeographic Distributions of the Sibling Species Mytilus galloprovincialis and M. trossulus (Bivalvia: Mytilidae) and Their Hybrids in the North Pacific.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genetic diversity and population structure of the Chinese mitten crab Eriocheir sinensis in its native range

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Comparison of solution-based exome capture methods for next generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genome-wide analysis of DNA methylation in five tissues of Zhikong scallop, Chlamys farreri

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Selection versus demography: a multilocus investigation of the domestication process in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Adaptation in marine invasion: a genetic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Transcriptome sequencing reveals both neutral and adaptive genome dynamics in a marine invader

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

European green crabs (Carcinus maenas) in the northeastern Pacific: genetic evidence for high population connectivity and current-mediated expansion from a single introduced source population

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Advances and limits of using population genetics to understand local adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Gene discovery through transcriptome sequencing for the invasive mussel Limnoperna fortunei

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

A toad more traveled: the heterogeneous invasion dynamics of cane toads in Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genetic diversity in Undaria pinnatifida (Laminariales, Phaeophyceae) deduced from mitochondria genes – origins and succession of introduced populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Rapid genetic adaptation precedes the spread of an exotic plant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Linking concepts in the ecology and evolution of invasive plants: network analysis shows what has been most studied and identifies knowledge gaps

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Detection of selective sweeps in structured populations: a comparison of recent methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Epigenetics in ecology and evolution: what we know and what we need to know

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Neutral and adaptive variation in gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of F(ST).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Indirect measures of gene flow and migration: FST not equal to 1/(4Nm + 1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Pitfalls of predicting complex traits from SNPs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genomic signature of adaptation to climate in Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Ascidians as models for studying invasion success

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Complete Plastid Genome Sequence of the Brown Alga Undaria pinnatifida

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Comparative transcriptome analysis of two oysters, Crassostrea gigas and Crassostrea hongkongensis provides insights into adaptation to hypo-osmotic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Invasion of the Black Sea by the ctenophore Mnemiopsis leidyi and recent changes in pelagic community structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Genetic diversity of Southern hemisphere blue mussels (Bivalvia: Mytilidae) and the identification of non-indigenous taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4

Introduction of the northern Pacific asteroid Asterias amurensis to Tasmania: reproduction and current distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00227-016-2961-4