Scaling up data curation using deep learning: An application to literature triage in genomic variation resources (Q56888310)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30102703%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

title

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources (English)

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17 April 2020

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1

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17 April 2020

Aoife C McMahon

3

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17 April 2020

Alan J Bridge

8

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17 April 2020

Fiona Cunningham

9

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17 April 2020

Zhiyong Lu

11

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17 April 2020

4

Chih-Hsuan Wei

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17 April 2020

Maria Livia Famiglietti

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object named as

Maria Livia Famiglietti

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17 April 2020

10

Ioannis Xenarios

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17 April 2020

author name string

Jacqueline Ann Langdon MacArthur

5

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17 April 2020

Sylvain Poux

6

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17 April 2020

Lionel Breuza

7

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17 April 2020

language of work or name

English

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publication date

13 August 2018

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PLOS Computational Biology

17 April 2020

published in

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17 April 2020

volume

14

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17 April 2020

issue

8

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17 April 2020

page(s)

e1006390

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Creative Commons CC0 License

17 April 2020

copyright license

start time

13 August 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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describes a project that uses

1 reference

Deep learning of mutation-gene-drug relations from the literature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6107285

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study

2 November 2018

1 reference

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tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine

2 November 2018

1 reference

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The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)

2 November 2018

1 reference

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UniProt: the universal protein knowledgebase

2 November 2018

1 reference

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Drug drug interaction extraction from biomedical literature using syntax convolutional neural network

2 November 2018

1 reference

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Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts

2 November 2018

1 reference

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Perspective: Sustaining the big-data ecosystem

2 November 2018

1 reference

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Machine learning for biomedical literature triage

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6107285

Mutation extraction tools can be combined for robust recognition of genetic variants in the literature

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6107285

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

2 November 2018

1 reference

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Curation accuracy of model organism databases

2 November 2018

1 reference

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Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation

2 November 2018

1 reference

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Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data

2 November 2018

1 reference

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PubTator: a web-based text mining tool for assisting biocuration

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6107285

tmVar: a text mining approach for extracting sequence variants in biomedical literature

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6107285

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

2 November 2018

1 reference

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Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

2 November 2018

1 reference

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A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions

2 November 2018

1 reference

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Text mining for the biocuration workflow

2 November 2018

1 reference

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A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

2 November 2018

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Curation of characterized glycoside hydrolases of fungal origin

2 November 2018

1 reference

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Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

2 November 2018

1 reference

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Face recognition: a convolutional neural-network approach

2 November 2018

1 reference

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Manual curation is not sufficient for annotation of genomic databases

2 November 2018

1 reference

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A census of human cancer genes

2 November 2018

1 reference

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10.1371/JOURNAL.PCBI.1006390

2 November 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30102703%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/LeeFMWMPBBCXL18

17 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30102703%20AND%20SRC:MED&resulttype=core&format=json

17 April 2020

PubMed publication ID

30102703

1 reference