DNA Polymerase Template Interactions Probed by Degenerate Isosteric Nucleobase Analogs (Q79106146)

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19 December 2019

title

DNA polymerase template interactions probed by degenerate isosteric nucleobase analogs (English)

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19 December 2019

DNA Polymerase Template Interactions Probed by Degenerate Isosteric Nucleobase Analogs (English)

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https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

16 March 2024

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16 March 2024

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https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

16 March 2024

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https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

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7

V. Jo Davisson

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16 March 2024

author name string

Natasha Paul

1

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19 December 2019

Geoffrey Hoops

3

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19 December 2019

Peiming Zhang

4

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19 December 2019

Jie Zhou

5

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19 December 2019

Vishal C. Nashine

2

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Donald E. Bergstrom

6

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16 March 2024

language of work or name

English

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National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=14522052

16 March 2024

publication date

1 September 2003

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full work available at URL

19 December 2019

http://www.cell.com/article/S107455210300190X/pdf

file format

Portable Document Format

online access status

open access

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https://api.elsevier.com/content/article/PII:S107455210300190X?httpAccept=text/xml

16 March 2024

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https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

https://api.elsevier.com/content/article/PII:S107455210300190X?httpAccept=text/plain

16 March 2024

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16 March 2024

published in

Chemistry and Biology

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19 December 2019

volume

10

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19 December 2019

issue

9

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19 December 2019

page(s)

815-825

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Active site tightness and substrate fit in DNA replication

19 December 2019

cites work

1

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

16 March 2024

2

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Crystal structures of a ddATP-, ddTTP-, ddCTP, and ddGTP- trapped ternary complex of Klentaq1: insights into nucleotide incorporation and selectivity

16 March 2024

3

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

16 March 2024

4

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

16 March 2024

5

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

DNA polymerases: structural diversity and common mechanisms

16 March 2024

6

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes.

16 March 2024

7

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

High fidelity DNA synthesis by the Thermus aquaticus DNA polymerase

16 March 2024

8

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Thermus aquaticus DNA polymerase I mutants with altered fidelity. Interacting mutations in the O-helix

16 March 2024

9

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides

16 March 2024

10

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

O-helix mutant T664P of Thermus aquaticus DNA polymerase I: altered catalytic properties for incorporation of incorrect nucleotides but not correct nucleotides

16 March 2024

11

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation

16 March 2024

12

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Recognition by viral and cellular DNA polymerases of nucleosides bearing bases with nonstandard hydrogen bonding patterns

16 March 2024

13

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Synthesis and duplex stability of oligonucleotides containing adenine-guanine analogues

16 March 2024

14

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Polymerase recognition of synthetic oligodeoxyribonucleotides incorporating degenerate pyrimidine and purine bases

16 March 2024

16

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet

16 March 2024

18

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Enzymic recognition of the base pair between isocytidine and isoguanosine

16 March 2024

19

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Replication of non-hydrogen bonded bases by DNA polymerases: a mechanism for steric matching

16 March 2024

21

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Highly Precise Shape Mimicry by a Difluorotoluene Deoxynucleoside, a Replication‐Competent Substitute for Thymidine

16 March 2024

22

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Structure and Base Pairing Properties of a Replicable Nonpolar Isostere for Deoxyadenosine

16 March 2024

23

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity

16 March 2024

24

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication

16 March 2024

25

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Varied Molecular Interactions at the Active Sites of Several DNA Polymerases: Nonpolar Nucleoside Isosteres as Probes

16 March 2024

26

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Synthesis of 6-(2-thienyl)purine nucleoside derivatives that form unnatural base pairs with pyridin-2-one nucleosides

16 March 2024

27

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Unnatural base pairs for specific transcription

16 March 2024

29

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Efforts toward expansion of the genetic alphabet: replication of DNA with three base pairs

16 March 2024

31

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Template directed incorporation of nucleotide mixtures using azole-nucleobase analogs

16 March 2024

33

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Crystallographic studies of DNA containing mismatches, modified and unpaired bases

16 March 2024

34

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Exploratory studies on azole carboxamides as nucleobase analogs: thermal denaturation studies on oligodeoxyribonucleotide duplexes containing pyrrole-3-carboxamide

16 March 2024

36

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

The synthesis and stability of oligodeoxyribonucleotides containing the deoxyadenosine mimic 1-(2'-deoxy-beta-D-ribofuranosyl)imidazole-4-carboxamide

16 March 2024

37

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Significance of nucleobase shape complementarity and hydrogen bonding in the formation and stability of the closed polymerase-DNA complex

16 March 2024

41

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Ambiguous base pairing of the purine analogue 1-(2-deoxy-beta-D-ribofuranosyl)-imidazole-4-carboxamide during PCR

16 March 2024

43

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Universal bases for hybridization, replication and chain termination

16 March 2024

44

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection

16 March 2024

45

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates

16 March 2024

46

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Identification of hydrogen bonds between Escherichia coli DNA polymerase I (Klenow fragment) and the minor groove of DNA by amino acid substitution of the polymerase and atomic substitution of the DNA.

16 March 2024

48

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

CH/π Interaction in the Packing of the Adenine Ring in Protein Structures

16 March 2024

50

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Protein recognition of adenylate: an example of a fuzzy recognition template

16 March 2024

51

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

CH/pi interactions as demonstrated in the crystal structure of guanine-nucleotide binding proteins, Src homology-2 domains and human growth hormone in complex with their specific ligands

16 March 2024

52

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

A mutant of DNA polymerase I (Klenow fragment) with reduced fidelity

16 March 2024

53

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Slow rate of phosphodiester bond formation accounts for the strong bias that Taq DNA polymerase shows against 2',3'-dideoxynucleotide terminators

16 March 2024

54

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Conformational coupling in DNA polymerase fidelity

16 March 2024

55

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

A reexamination of the nucleotide incorporation fidelity of DNA polymerases

16 March 2024

56

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model

16 March 2024

58

1 reference

https://api.crossref.org/works/10.1016/J.CHEMBIOL.2003.08.008

16 March 2024

Identifiers

1 reference

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19 December 2019

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