Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements (Q84206006)

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scientific article published on 22 May 2012

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English	Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements	scientific article published on 22 May 2012

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2 February 2020

Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements (English)

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Ulrich Güldener

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Martin Münsterkötter

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Regine Kahmann

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2 February 2020

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John D Laurie

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2 February 2020

Shawkat Ali

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2 February 2020

Rob Linning

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2 February 2020

Gertrud Mannhaupt

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2 February 2020

Philip Wong

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2 February 2020

Richard Moore

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publication date

22 May 2012

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2 February 2020

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2 February 2020

1733-1745

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2 February 2020

Evolutionary dynamics of transposable elements in a small RNA world

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https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens

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https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

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https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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The genome sequence of the rice blast fungus Magnaporthe grisea

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https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Swi6/HP1 recruits a JmjC domain protein to facilitate transcription of heterochromatic repeats

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https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The a mating type locus of U. maydis specifies cell signaling components

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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RIP: the evolutionary cost of genome defense

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Characterizing the role of RNA silencing components in Cryptococcus neoformans

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

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https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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The secretome of the maize pathogen Ustilago maydis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Locating proteins in the cell using TargetP, SignalP and related tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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The mating-type and pathogenicity locus of the fungus Ustilago hordei spans a 500-kb region

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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A maize-specifically expressed gene cluster in Ustilago maydis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Linkage of mating-type loci distinguishes bipolar from tetrapolar mating in basidiomycetous smut fungi.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Tandem repeats finder: a program to analyze DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Genome evolution following host jumps in the Irish potato famine pathogen lineage

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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QTL mapping of resistance to Sporisorium reiliana in maize.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Marker-based cloning of the region containing the UhAvr1 avirulence gene from the basidiomycete barley pathogen Ustilago hordei

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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The A, B, Gs of silencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Sex in smut fungi: Structure, function and evolution of mating-type complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Diverse roles of HP1 proteins in heterochromatin assembly and functions in fission yeast.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

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Assessing the gene space in draft genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Assessing the performance of single-copy genes for recovering robust phylogenies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping QTLs contributing to Ustilago maydis resistance in specific plant tissues of maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Transposable elements and the epigenetic regulation of the genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Entropies of coding and noncoding sequences of DNA and proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Compatibility with killer explains the rise of RNAi-deficient fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution and diversification of RNA silencing proteins in fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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On the origin and functions of RNA-mediated silencing: from protists to man

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Basic local alignment search tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Origins and evolution of eukaryotic RNA interference

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Molecules as documents of evolutionary history

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mating type loci of Sporisorium reilianum: novel pattern with three a and multiple b specificities.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

454 sequencing put to the test using the complex genome of barley

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Multiallelic recognition: nonself-dependent dimerization of the bE and bW homeodomain proteins in Ustilago maydis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TEclass--a tool for automated classification of unknown eukaryotic transposable elements.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hallmarks of RNA silencing are found in the smut fungus Ustilago hordei but not in its close relative Ustilago maydis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNAi, heterochromatin and the cell cycle

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation at asymmetric sites is associated with numerous transition mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNAi in budding yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The homologous recombination system of Ustilago maydis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pep1, a secreted effector protein of Ustilago maydis, is required for successful invasion of plant cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of DNA sequences with protein sequences.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CAP3: A DNA sequence assembly program

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

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Morphological and molecular analyses of host and nonhost interactions involving barley and wheat and the covered smut pathogen Ustilago hordei

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cell cycle control of centromeric repeat transcription and heterochromatin assembly

1 reference

https://pubmed.ncbi.nlm.nih.gov/22623492

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.112.097261

1 reference

Europe PubMed Central

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2 February 2020

PubMed publication ID

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Europe PubMed Central

PubMed publication ID

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2 February 2020

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