Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria) (Q90340317)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31562384%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

title

Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria) (English)

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1

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Nikolaus Leisch

2

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Harald Gruber-Vodicka

4

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Halina E. Tegetmeyer

5

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Manuel Kleiner

7

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Samantha B. Joye

9

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Nicole Dubilier

11

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Jillian M Petersen

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8

Tjorven Hinzke

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author name string

Dimitri V Meier

3

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Anke Meyerdierks

6

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Matthew Saxton

10

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publication date

27 September 2019

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volume

14

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issue

1

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page(s)

104-122

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describes a project that uses

13 April 2020

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Beyond the Calvin cycle: autotrophic carbon fixation in the ocean

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

A synthetic pathway for the fixation of carbon dioxide in vitro

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

The microbial engines that drive Earth's biogeochemical cycles.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Rubisco: still the most abundant protein of Earth?

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

A short history of RubisCO: the rise and fall (?) of Nature's predominant CO2 fixing enzyme.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

A new ferredoxin-dependent carbon reduction cycle in a photosynthetic bacterium

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Reversibility of citrate synthase allows autotrophic growth of a thermophilic bacterium.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Erratum: Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

The versatile epsilon-proteobacteria: key players in sulphidic habitats

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the -Proteobacteria isolated from Okinawa Trough hydrothermal sediments

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Sulfur metabolisms in epsilon- and gamma-proteobacteria in deep-sea hydrothermal fields

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Evidence for the role of endosymbionts in regional-scale habitat partitioning by hydrothermal vent symbioses

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: diversity, function and evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Hydrogen is an energy source for hydrothermal vent symbioses

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

A specific and widespread association between deep-sea Bathymodiolus mussels and a novel family of Epsilonproteobacteria

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Chemosynthetic ectosymbionts associated with a shallow-water marine nematode

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Towards a genome-based taxonomy for prokaryotes

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Evidence for the bacterial origin of genes encoding fermentation enzymes of the amitochondriate protozoan parasite Entamoeba histolytica

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Genome assembly forensics: finding the elusive mis-assembly

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Assessing species biomass contributions in microbial communities via metaproteomics

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Thermogenic gas hydrates and hydrocarbon gases in complex chemosynthetic communities, Gulf of Mexico continental slope

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Endosymbiont genomes yield clues of tubeworm success

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Genetic Evidence for Two Carbon Fixation Pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in Symbiotic and Free-Living Bacteria

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Analysis of codon usage in type 1 and the new genotypes of duck hepatitis virus

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Metaproteomics reveals abundant transposase expression in mutualistic endosymbionts

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Environmental Breviatea harbour mutualistic Arcobacter epibionts

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Pyruvate ferredoxin oxidoreductase and its radical intermediate

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Iron-sulphur clusters and the problem with oxygen

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Ecological aspects of the distribution of different autotrophic CO2 fixation pathways

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Ecological succession leads to chemosynthesis in mats colonizing wood in sea water

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Ecology drives a global network of gene exchange connecting the human microbiome.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Change is good: variations in common biological mechanisms in the epsilonproteobacterial genera Campylobacter and Helicobacter

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Sugar Synthesis from CO2 in Escherichia coli

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Design and analysis of synthetic carbon fixation pathways

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Linking regional variation of epibiotic bacterial diversity and trophic ecology in a new species of Kiwaidae (Decapoda, Anomura) from East Scotia Ridge (Antarctica) hydrothermal vents.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Success of chemolithoautotrophic SUP05 and Sulfurimonas GD17 cells in pelagic Baltic Sea redox zones is facilitated by their lifestyles as K- and r-strategists.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Microbial consumption of zero-valence sulfur in marine benthic habitats.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

The evolution of modularity in bacterial metabolic networks.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

The binning of metagenomic contigs for microbial physiology of mixed cultures

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

The RAST Server: rapid annotations using subsystems technology

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

IMG 4 version of the integrated microbial genomes comparative analysis system

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

ProtTest 3: fast selection of best-fit models of protein evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Bayesian inference of phylogeny and its impact on evolutionary biology

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Universal sample preparation method for proteome analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation.

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

A cross-platform toolkit for mass spectrometry and proteomics

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Improved ultrastructure of marine invertebrates using non-toxic buffers

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

Rapid embedding methods into epoxy and LR White resins for morphological and immunological analysis of cryofixed biological specimens

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

2016 update of the PRIDE database and its related tools

1 reference

https://api.crossref.org/works/10.1038%2FS41396-019-0508-7

7 January 2021

DNA recovery from soils of diverse composition.

1 reference

12 December 2020

Metabolism and genetics of Helicobacter pylori: the genome era.

1 reference

12 December 2020

Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields.

1 reference

12 December 2020

Dancing for food in the deep sea: bacterial farming by a new species of Yeti crab

1 reference

12 December 2020

Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria

1 reference

12 December 2020

Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)

1 reference

12 December 2020

10.1038/S41396-019-0508-7

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31562384%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31562384%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

PubMed publication ID

31562384

1 reference