| #
|
Count
|
Resource
|
Example
|
| 1
|
3036
|
ImageJ
|
AFM stiffness nanotomography of normal, metaplastic and dysplastic human esophageal cells
|
| 2
|
1311
|
limma
|
Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice
|
| 3
|
1037
|
Cytoscape
|
Regions of variable DNA methylation in human placenta associated with newborn neurobehavior
|
| 4
|
749
|
ggplot2
|
Far from home: Distance patterns of global fishing fleets
|
| 5
|
595
|
genome-wide association study
|
Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions
|
| 6
|
525
|
ArcGIS
|
High Zika Virus Seroprevalence in Salvador, Northeastern Brazil Limits the Potential for Further Outbreaks
|
| 7
|
463
|
DESeq2
|
Deep Transcriptomic Profiling of M1 Macrophages Lacking Trpc3.
|
| 8
|
447
|
Bayes' theorem
|
An EM algorithm to improve the estimation of the probability of clonal relatedness of pairs of tumors in cancer patients
|
| 9
|
372
|
RStudio
|
The mitotic spindle is chiral due to torques within microtubule bundles
|
| 10
|
334
|
scikit-learn
|
pySPACE-a signal processing and classification environment in Python
|
| 11
|
319
|
machine learning
|
Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methods
|
| 12
|
318
|
edgeR
|
Genome-wide association study identifies shared risk loci common to two malignancies in golden retrievers
|
| 13
|
299
|
Jupyter notebook file
|
Generating dynamical neuroimaging spatiotemporal representations (DyNeuSR) using topological data analysis
|
| 14
|
287
|
artificial neural network
|
Microwave Tomography Using Neural Networks for Its Application in an Industrial Microwave Drying System
|
| 15
|
275
|
SQL
|
Visual barcodes for clonal-multiplexing of live microscopy-based assays
|
| 16
|
255
|
ImageQuant
|
Activin controls skin morphogenesis and wound repair predominantly via stromal cells and in a concentration-dependent manner via keratinocytes
|
| 17
|
182
|
Neuron
|
Tractography Activation Patterns in Dorsolateral Prefrontal Cortex Suggest Better Clinical Responses in OCD DBS.
|
| 18
|
151
|
Large Hadron Collider
|
Measurement of Higgs boson production in the diphoton decay channel in pp collisions at center-of-mass energies of 7 and 8 TeV with the ATLAS detector
|
| 19
|
150
|
R package
|
medflex: An R Package for Flexible Mediation Analysis using Natural Effect Models
|
| 20
|
148
|
deep learning
|
MR image reconstruction using deep learning: evaluation of network structure and loss functions
|
| 21
|
147
|
Reynolds number
|
Life at low Reynolds number
|
| 22
|
134
|
scikit-image
|
Cohesin Loss Eliminates All Loop Domains
|
| 23
|
133
|
Neutron Star Interior Composition Explorer
|
Searches for Gravitational Waves from Known Pulsars at Two Harmonics in 2015–2017 LIGO Data
|
| 24
|
115
|
affy
|
AGA: Interactive pipeline for reproducible gene expression and DNA methylation data analyses.
|
| 25
|
113
|
WGCNA
|
Whole-transcriptome analysis delineates the human placenta gene network and its associations with fetal growth.
|
| 26
|
109
|
support vector machine
|
Prediction of protein solvent accessibility using support vector machines.
|
| 27
|
99
|
magnetic resonance imaging
|
Differences in regional cerebral oximetry during cardiac surgery for patients with or without postoperative cerebral ischaemic lesions evaluated by magnetic resonance imaging
|
| 28
|
98
|
field experiment
|
Field experiment evidence of substantive, attributional, and behavioral persuasion by members of Congress in online town halls
|
| 29
|
88
|
crowdsourcing
|
Modelling Influence and Opinion Evolution in Online Collective Behaviour
|
| 30
|
85
|
MUMmer
|
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
|
| 31
|
81
|
NumPy
|
Generating dynamical neuroimaging spatiotemporal representations (DyNeuSR) using topological data analysis
|
| 32
|
76
|
CellProfiler
|
Systematic cell-based phenotyping of missense alleles empowers rare variant association studies: a case for LDLR and myocardial infarction
|
| 33
|
75
|
Python
|
pySPACE-a signal processing and classification environment in Python
|
| 34
|
74
|
molecular dynamics simulation
|
Second inflection point of water surface tension in the deeply supercooled regime revealed by entropy anomaly and surface structure using molecular dynamics simulations
|
| 35
|
67
|
Alpha Magnetic Spectrometer
|
First Result from the Alpha Magnetic Spectrometer on the International Space Station: Precision Measurement of the Positron Fraction in Primary Cosmic Rays of 0.5–350 GeV
|
| 36
|
64
|
atomic force microscopy
|
The proximity between C-termini of dimeric vacuolar H+-pyrophosphatase determined using atomic force microscopy and a gold nanoparticle technique.
|
| 37
|
61
|
mass spectrometry
|
Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data
|
| 38
|
60
|
phyloseq
|
Genetic determinants of gut microbiota composition and bile acid profiles in mice
|
| 39
|
56
|
microfluidics
|
Semi-permeable vesicles produced by microfluidics to tune the phase behaviour of encapsulated macromolecules
|
| 40
|
55
|
minfi
|
Epigenome-Wide Assessment of DNA Methylation in the Placenta and Arsenic Exposure in the New Hampshire Birth Cohort Study (USA)
|
| 41
|
54
|
massive parallel sequencing
|
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data.
|
| 42
|
49
|
NMR spectroscopy
|
ANNALS EXPRESS: Establishing reference intervals for triglyceride containing lipoprotein sub-fraction metabolites measured using Nuclear Magnetic Resonance Spectroscopy in a UK population
|
| 43
|
45
|
dplyr
|
Longitudinal Study of the Variation in Patient Turnover and Patient-to-Nurse Ratio: Descriptive Analysis of a Swiss University Hospital
|
| 44
|
45
|
10x Genomics Chromium
|
Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
|
| 45
|
39
|
functional magnetic resonance imaging
|
Sparse network-based models for patient classification using fMRI.
|
| 46
|
37
|
OpenSim
|
Similar muscles contribute to horizontal and vertical acceleration of center of mass in forward and backward walking: implications for neural control
|
| 47
|
36
|
Raman spectroscopy
|
Peak window correlation method for drug screening using Raman spectroscopy
|
| 48
|
33
|
positron emission tomography
|
High frequency of capsular knee involvement in polymyalgia rheumatica/giant cell arteritis patients studied by positron emission tomography.
|
| 49
|
33
|
MIRA
|
Draft Genome Sequence of FT9, a Novel Bacillus cereus Strain Isolated from a Brazilian Thermal Spring.
|
| 50
|
32
|
RNA-Seq
|
Integrated analysis of dysregulated lncRNA expression in breast cancer cell identified by RNA-seq study
|
| 51
|
31
|
synchrotron radiation
|
Investigation of bone with synchrotron radiation imaging: from micro to nano.
|
| 52
|
31
|
Amazon Mechanical Turk
|
Gaining perspective on what we've lost: the reliability of encoded anecdotes in historical ecology
|
| 53
|
30
|
SMART-Seq
|
Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification
|
| 54
|
30
|
computed tomography
|
Global longitudinal strain assessment by computed tomography in severe aortic stenosis patients - Feasibility using feature tracking analysis
|
| 55
|
29
|
Wikidata
|
A cross-verified database of notable people, 3500BC-2018AD
|
| 56
|
26
|
electronic health records
|
Community Health Worker Impact on Chronic Disease Outcomes Within Primary Care Examined Using Electronic Health Records.
|
| 57
|
24
|
tximport
|
Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines
|
| 58
|
22
|
ComplexHeatmap
|
Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage
|
| 59
|
22
|
cell culture
|
Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
|
| 60
|
21
|
R
|
The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata
|
| 61
|
21
|
ggtree
|
Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods
|
| 62
|
20
|
brain
|
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
|
| 63
|
19
|
PyMOL
|
Specific residues of the cytoplasmic domains of cardiac inward rectifier potassium channels are effective antifibrillatory targets
|
| 64
|
19
|
CALorimetric Electron Telescope
|
Energy Spectrum of Cosmic-Ray Electron and Positron from 10 GeV to 3 TeV Observed with the Calorimetric Electron Telescope on the International Space Station.
|
| 65
|
18
|
flow cytometry
|
New method to detect histone acetylation levels by flow cytometry
|
| 66
|
18
|
accelerometer
|
Evaluation of neural networks to identify types of activity using accelerometers.
|
| 67
|
17
|
microarray
|
Transcriptional profiling of Mycoplasma hyopneumoniae during heat shock using microarrays.
|
| 68
|
15
|
Praat
|
Obstructive Sleep Apnea in Women: Study of Speech and Craniofacial Characteristics
|
| 69
|
15
|
Wikipedia
|
A cross-verified database of notable people, 3500BC-2018AD
|
| 70
|
14
|
RTCA
|
Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation
|
| 71
|
14
|
SODI-DCMIX
|
Isothermal molecular diffusion in mixtures containing toluene, cyclohexane and methanol.
|
| 72
|
14
|
optical coherence tomography
|
Visualization of micro-capillaries using optical coherence tomography angiography with and without adaptive optics.
|
| 73
|
14
|
remote sensing
|
Early recognition of glacial lake hazards in the Himalaya using remote sensing datasets
|
| 74
|
13
|
liquid chromatography-tandem mass spectrometry
|
Analysis of N7-(benzo[a]pyrene-6-yl)guanine in urine using two-step solid-phase extraction and isotope dilution with liquid chromatography/tandem mass spectrometry.
|
| 75
|
13
|
GEOquery
|
Integrating multi-omic features exploiting Chromosome Conformation Capture data.
|
| 76
|
13
|
fluorescence in situ hybridization
|
Morphological spot counting from stacked images for automated analysis of gene copy numbers by fluorescence in situ hybridization
|
| 77
|
12
|
HCT 116
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 78
|
12
|
lung
|
SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells
|
| 79
|
12
|
Drop-seq
|
A cellular census of human lungs identifies novel cell states in health and in asthma
|
| 80
|
11
|
liquid chromatography–mass spectrometry
|
Solid-phase extraction of organic compounds in atmospheric aerosol particles collected with the particle-into-liquid sampler and analysis by liquid chromatography-mass spectrometry
|
| 81
|
11
|
molecular modelling
|
Shear Piezoelectricity in Poly(vinylidenefluoride-co-trifluoroethylene): Full Piezotensor Coefficients by Molecular Modeling, Biaxial Transverse Response, and Use in Suspended Energy-Harvesting Nanostructures.
|
| 82
|
11
|
spectral domain optical coherence tomography
|
An automated approach for early detection of diabetic retinopathy using SD-OCT images.
|
| 83
|
11
|
HT-29
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 84
|
11
|
DBpedia
|
RDF Graph Embeddings for Content-based Recommender Systems
|
| 85
|
11
|
HDF5
|
Standardizing the next generation of bioinformatics software development with BioHDF (HDF5).
|
| 86
|
11
|
common garden experiment
|
The signature of fine scale local adaptation in Atlantic salmon revealed from common garden experiments in nature.
|
| 87
|
11
|
WordSim-353
|
Placing search in context: the concept revisited
|
| 88
|
10
|
high-performance liquid chromatography
|
Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry.
|
| 89
|
10
|
ImageNet
|
WSABIE: scaling up to large vocabulary image annotation
|
| 90
|
10
|
Matplotlib
|
The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata
|
| 91
|
10
|
pyrosequencing
|
Absolute quantitation of DNA methylation of 28 candidate genes in prostate cancer using pyrosequencing.
|
| 92
|
10
|
SW403
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 93
|
10
|
SW1417
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 94
|
10
|
LS174T
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 95
|
10
|
LoVo
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 96
|
10
|
HCA7
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 97
|
10
|
GP2d
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 98
|
10
|
SW620
|
A comprehensive transcriptional portrait of human cancer cell lines
|
| 99
|
10
|
stable isotope
|
Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose
|
| 100
|
9
|
gas chromatography-mass spectrometry
|
Characterization of organic compounds in aerosol particles from a coniferous forest by GC-MS.
|