Wikidata:WikiProject Mathematics/Wikidata lists/Methods used (P4510) by people with a zbMATH author ID (P1556)

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#	Count	Resource	Example
1	2956	ImageJ	AFM stiffness nanotomography of normal, metaplastic and dysplastic human esophageal cells
2	1255	limma	Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice
3	985	Cytoscape	Regions of variable DNA methylation in human placenta associated with newborn neurobehavior
4	717	ggplot2	Far from home: Distance patterns of global fishing fleets
5	585	genome-wide association study	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions
6	477	ArcGIS	High Zika Virus Seroprevalence in Salvador, Northeastern Brazil Limits the Potential for Further Outbreaks
7	449	DESeq2	Deep Transcriptomic Profiling of M1 Macrophages Lacking Trpc3.
8	426	Bayes' theorem	An EM algorithm to improve the estimation of the probability of clonal relatedness of pairs of tumors in cancer patients
9	362	RStudio	Far from home: Distance patterns of global fishing fleets
10	325	scikit-learn	pySPACE-a signal processing and classification environment in Python
11	314	machine learning	Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methods
12	306	edgeR	Genome-wide association study identifies shared risk loci common to two malignancies in golden retrievers
13	287	Jupyter notebook file	Generating dynamical neuroimaging spatiotemporal representations (DyNeuSR) using topological data analysis
14	280	artificial neural network	Search for supersymmetry in events with opposite-sign dileptons and missing transverse energy using an artificial neural network
15	259	SQL	Visual barcodes for clonal-multiplexing of live microscopy-based assays
16	250	ImageQuant	Activin controls skin morphogenesis and wound repair predominantly via stromal cells and in a concentration-dependent manner via keratinocytes
17	167	Neuron	Computational neurobiology is a useful tool in translational neurology: the example of ataxia
18	151	Large Hadron Collider	Measurement of Higgs boson production in the diphoton decay channel in pp collisions at center-of-mass energies of 7 and 8 TeV with the ATLAS detector
19	145	Reynolds number	Life at low Reynolds number
20	143	deep learning	MR image reconstruction using deep learning: evaluation of network structure and loss functions
21	142	R package	medflex: An R Package for Flexible Mediation Analysis using Natural Effect Models
22	129	scikit-image	Cohesin Loss Eliminates All Loop Domains
23	122	Neutron Star Interior Composition Explorer	Searches for Gravitational Waves from Known Pulsars at Two Harmonics in 2015–2017 LIGO Data
24	112	affy	AGA: Interactive pipeline for reproducible gene expression and DNA methylation data analyses.
25	108	WGCNA	Whole-transcriptome analysis delineates the human placenta gene network and its associations with fetal growth.
26	98	magnetic resonance imaging	Differences in regional cerebral oximetry during cardiac surgery for patients with or without postoperative cerebral ischaemic lesions evaluated by magnetic resonance imaging
27	97	field experiment	Targeting the Poor: Evidence from a Field Experiment in Indonesia
28	85	MUMmer	Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
29	83	crowdsourcing	Modelling Influence and Opinion Evolution in Online Collective Behaviour
30	76	NumPy	Generating dynamical neuroimaging spatiotemporal representations (DyNeuSR) using topological data analysis
31	74	CellProfiler	Systematic cell-based phenotyping of missense alleles empowers rare variant association studies: a case for LDLR and myocardial infarction
32	72	molecular dynamics simulation	Second inflection point of water surface tension in the deeply supercooled regime revealed by entropy anomaly and surface structure using molecular dynamics simulations
33	70	Python	pySPACE-a signal processing and classification environment in Python
34	67	Alpha Magnetic Spectrometer	First Result from the Alpha Magnetic Spectrometer on the International Space Station: Precision Measurement of the Positron Fraction in Primary Cosmic Rays of 0.5–350 GeV
35	63	atomic force microscopy	The proximity between C-termini of dimeric vacuolar H+-pyrophosphatase determined using atomic force microscopy and a gold nanoparticle technique.
36	59	mass spectrometry	Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data
37	56	microfluidics	High-Throughput and Sensitive Quantification of Circulating Tumor DNA by Microfluidic-Based Multiplex PCR and Next-Generation Sequencing.
38	54	phyloseq	Genetic determinants of gut microbiota composition and bile acid profiles in mice
39	52	minfi	Epigenome-Wide Assessment of DNA Methylation in the Placenta and Arsenic Exposure in the New Hampshire Birth Cohort Study (USA)
40	50	massive parallel sequencing	geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data.
41	45	NMR spectroscopy	ANNALS EXPRESS: Establishing reference intervals for triglyceride containing lipoprotein sub-fraction metabolites measured using Nuclear Magnetic Resonance Spectroscopy in a UK population
42	44	10x Genomics Chromium	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
43	40	dplyr	Accuracy and Calibration of Computational Approaches for Inpatient Mortality Predictive Modeling
44	37	functional magnetic resonance imaging	Sparse network-based models for patient classification using fMRI.
45	37	OpenSim	Similar muscles contribute to horizontal and vertical acceleration of center of mass in forward and backward walking: implications for neural control
46	36	Raman spectroscopy	Peak window correlation method for drug screening using Raman spectroscopy
47	31	synchrotron radiation	Search for X-Ray Induced Acceleration of the Decay of the 31-Yr Isomer of H 178 f Using Synchrotron Radiation
48	31	MIRA	Draft Genome Sequence of FT9, a Novel Bacillus cereus Strain Isolated from a Brazilian Thermal Spring.
49	31	RNA-Seq	Integrated analysis of dysregulated lncRNA expression in breast cancer cell identified by RNA-seq study
50	30	SMART-Seq	Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification
51	30	Amazon Mechanical Turk	Gaining perspective on what we've lost: the reliability of encoded anecdotes in historical ecology
52	30	computed tomography	Global longitudinal strain assessment by computed tomography in severe aortic stenosis patients - Feasibility using feature tracking analysis
53	27	positron emission tomography	High frequency of capsular knee involvement in polymyalgia rheumatica/giant cell arteritis patients studied by positron emission tomography.
54	27	Wikidata	A cross-verified database of notable people, 3500BC-2018AD
55	24	tximport	Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines
56	24	electronic health records	Community Health Worker Impact on Chronic Disease Outcomes Within Primary Care Examined Using Electronic Health Records.
57	22	cell culture	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
58	21	ComplexHeatmap	Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage
59	20	R	The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata
60	20	brain	Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
61	19	ggtree	Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods
62	19	PyMOL	Specific residues of the cytoplasmic domains of cardiac inward rectifier potassium channels are effective antifibrillatory targets
63	19	CALorimetric Electron Telescope	Energy Spectrum of Cosmic-Ray Electron and Positron from 10 GeV to 3 TeV Observed with the Calorimetric Electron Telescope on the International Space Station.
64	18	accelerometer	Classifying human motion quality for knee osteoarthritis using accelerometers.
65	16	flow cytometry	New method to detect histone acetylation levels by flow cytometry
66	16	microarray	From signatures to models: understanding cancer using microarrays
67	15	Praat	Can Birds Perceive Rhythmic Patterns? A Review and Experiments on a Songbird and a Parrot Species
68	14	RTCA	Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation
69	14	SODI-DCMIX	Isothermal molecular diffusion in mixtures containing toluene, cyclohexane and methanol.
70	14	optical coherence tomography	Visualization of micro-capillaries using optical coherence tomography angiography with and without adaptive optics.
71	14	Wikipedia	A cross-verified database of notable people, 3500BC-2018AD
72	13	GEOquery	Integrating multi-omic features exploiting Chromosome Conformation Capture data.
73	13	remote sensing	Early recognition of glacial lake hazards in the Himalaya using remote sensing datasets
74	13	fluorescence in situ hybridization	Morphological spot counting from stacked images for automated analysis of gene copy numbers by fluorescence in situ hybridization
75	12	HCT 116	A comprehensive transcriptional portrait of human cancer cell lines
76	12	lung	SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells
77	12	Drop-seq	A cellular census of human lungs identifies novel cell states in health and in asthma
78	11	molecular modelling	Shear Piezoelectricity in Poly(vinylidenefluoride-co-trifluoroethylene): Full Piezotensor Coefficients by Molecular Modeling, Biaxial Transverse Response, and Use in Suspended Energy-Harvesting Nanostructures.
79	11	spectral domain optical coherence tomography	An automated approach for early detection of diabetic retinopathy using SD-OCT images.
80	11	HT-29	A comprehensive transcriptional portrait of human cancer cell lines
81	11	common garden experiment	The signature of fine scale local adaptation in Atlantic salmon revealed from common garden experiments in nature.
82	11	WordSim-353	Placing search in context: the concept revisited
83	10	DBpedia	Character-level Convolutional Networks for Text Classification
84	10	high-performance liquid chromatography	Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry.
85	10	Matplotlib	The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata
86	10	SW403	A comprehensive transcriptional portrait of human cancer cell lines
87	10	SW1417	A comprehensive transcriptional portrait of human cancer cell lines
88	10	LS174T	A comprehensive transcriptional portrait of human cancer cell lines
89	10	LoVo	A comprehensive transcriptional portrait of human cancer cell lines
90	10	HCA7	A comprehensive transcriptional portrait of human cancer cell lines
91	10	GP2d	A comprehensive transcriptional portrait of human cancer cell lines
92	10	SW620	A comprehensive transcriptional portrait of human cancer cell lines
93	10	HDF5	Standardizing the next generation of bioinformatics software development with BioHDF (HDF5).
94	9	Chemistry Development Kit	The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata
95	9	pyrosequencing	Absolute quantitation of DNA methylation of 28 candidate genes in prostate cancer using pyrosequencing.
96	9	SW948	A comprehensive transcriptional portrait of human cancer cell lines
97	9	SW837	A comprehensive transcriptional portrait of human cancer cell lines
98	9	SW48	A comprehensive transcriptional portrait of human cancer cell lines
99	9	SK-CO-1	A comprehensive transcriptional portrait of human cancer cell lines
100	9	DLD-1	A comprehensive transcriptional portrait of human cancer cell lines

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