Lagging-strand replication shapes the mutational landscape of the genome (Q28255984)

4

Sophie Marion de Procé

0 references

James Ding

James Ding

3

0 references

Martin S. Taylor

Martin S Taylor

6

0 references

Andrew Jackson

Andrew P Jackson

5

0 references

author name string

Martin A M Reijns

1

0 references

Harriet Kemp

Mutational signatures: the patterns of somatic mutations hidden in cancer genomes

2

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language of work or name

English

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publication date

26 February 2015

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published in

Nature

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volume

518

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issue

7540

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page(s)

502-6

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cites work

1 reference

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Ribonucleotides misincorporated into DNA act as strand-discrimination signals in eukaryotic mismatch repair

20 March 2017

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Mechanism for priming DNA synthesis by yeast DNA Polymerase α

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RNase H2 roles in genome integrity revealed by unlinking its activities

20 March 2017

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The accessible chromatin landscape of the human genome

20 March 2017

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An integrated encyclopedia of DNA elements in the human genome

20 March 2017

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The UCSC genome browser and associated tools

20 March 2017

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The major roles of DNA polymerases epsilon and delta at the eukaryotic replication fork are evolutionarily conserved

20 March 2017

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A high-resolution map of human evolutionary constraint using 29 mammals

20 March 2017

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Okazaki fragment maturation: nucleases take centre stage

20 March 2017

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The Structure of the Human RNase H2 Complex Defines Key Interaction Interfaces Relevant to Enzyme Function and Human Disease

20 March 2017

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High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

20 March 2017

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The DNA Damage Response: Making It Safe to Play with Knives

20 March 2017

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Conserved nucleosome positioning defines replication origins

20 March 2017

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Population genomics of domestic and wild yeasts

20 March 2017

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Division of labor at the eukaryotic replication fork

20 March 2017

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Yeast DNA polymerase epsilon participates in leading-strand DNA replication

20 March 2017

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20 March 2017

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Forces shaping the fastest evolving regions in the human genome

20 March 2017

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Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains

20 March 2017

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Mutation rates differ among regions of the mammalian genome

20 March 2017

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Ribonucleotides are signals for mismatch repair of leading-strand replication errors

20 March 2017

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Saccharomyces Genome Database: the genomics resource of budding yeast

20 March 2017

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Distribution and intensity of constraint in mammalian genomic sequence

7 April 2017

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Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

7 April 2017

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Evolution of transcription factor binding in metazoans - mechanisms and functional implications

29 September 2017

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JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

29 September 2017

1 reference

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Distinct properties of cell-type-specific and shared transcription factor binding sites

29 September 2017

1 reference

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Okazaki fragment metabolism

29 September 2017

1 reference

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Genome-wide analysis of FOXO3 mediated transcription regulation through RNA polymerase II profiling

29 September 2017

1 reference

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Histone chaperones in nucleosome assembly and human disease

29 September 2017

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Exonuclease 1 preferentially repairs mismatches generated by DNA polymerase α

29 September 2017

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Mismatch repair balances leading and lagging strand DNA replication fidelity.

29 September 2017

1 reference

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RNase H2-initiated ribonucleotide excision repair.

29 September 2017

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Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development.

29 September 2017

1 reference

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Fast computation and applications of genome mappability

29 September 2017

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Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

29 September 2017

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Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

29 September 2017

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Integration of regulatory networks by NKX3-1 promotes androgen-dependent prostate cancer survival

29 September 2017

1 reference

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Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration

29 September 2017

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Dual role of FoxA1 in androgen receptor binding to chromatin, androgen signalling and prostate cancer

29 September 2017

1 reference

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Widespread signatures of recent selection linked to nucleosome positioning in the human lineage.

29 September 2017

1 reference

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The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters

29 September 2017

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AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription

29 September 2017

1 reference

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Differential correction of lagging-strand replication errors made by DNA polymerases {alpha} and {delta}

29 September 2017

1 reference

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Genome-wide model for the normal eukaryotic DNA replication fork.

29 September 2017

1 reference

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Genome instability due to ribonucleotide incorporation into DNA.

29 September 2017

1 reference

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Variation in transcription factor binding among humans

29 September 2017

1 reference

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Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases

29 September 2017

1 reference

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Evolving views of DNA replication (in)fidelity

29 September 2017

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Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair.

29 September 2017

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MOODS: fast search for position weight matrix matches in DNA sequences

29 September 2017

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

29 September 2017

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Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

29 September 2017

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Hypermutable non-synonymous sites are under stronger negative selection

29 September 2017

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The impact of the nucleosome code on protein-coding sequence evolution in yeast

29 September 2017

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Flexibility of eukaryotic Okazaki fragment maturation through regulated strand displacement synthesis

29 September 2017

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Palm mutants in DNA polymerases alpha and eta alter DNA replication fidelity and translesion activity

29 September 2017

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The protein components and mechanism of eukaryotic Okazaki fragment maturation

29 September 2017

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Okazaki fragment processing: modulation of the strand displacement activity of DNA polymerase delta by the concerted action of replication protein A, proliferating cell nuclear antigen, and flap endonuclease-1.

29 September 2017

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Fidelity of DNA polymerase I and the DNA polymerase I-DNA primase complex from Saccharomyces cerevisiae

29 September 2017

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Saccharomyces cerevisiae cell cycle mutant cdc9 is defective in DNA ligase

29 September 2017

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Intrinsic coupling of lagging-strand synthesis to chromatin assembly.

29 September 2017

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A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

2 June 2018

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Evolutionary footprints of nucleosome positions in yeast

2 June 2018

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Replication dynamics of the yeast genome.

21 January 2018

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The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides

21 January 2018

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DNA methylation changes are a late event in acute promyelocytic leukemia and coincide with loss of transcription factor binding

21 January 2018

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Molecular biology. The structure of change

27 November 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/25624100

12 December 2020

inferred from PubMed ID database lookup

Evidence that errors made by DNA polymerase alpha are corrected by DNA polymerase delta

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25624100

12 December 2020

inferred from PubMed ID database lookup

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE14183

7 January 2021

inferred from DOI database lookup

Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE14183

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE14183

1 reference

journals/nature/ReijnsKDPJT15

1356392

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1045598554

0 references

1356392

1 reference

1 reference

1 reference