Quantifying evolutionary constraints on B-cell affinity maturation (Q28640162)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26194758%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Quantifying evolutionary constraints on B-cell affinity maturation (English)

1 reference

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19 February 2020

2

1 reference

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19 February 2020

Vladimir N. Minin

3

1 reference

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19 February 2020

Philip H. Bradley

4

1 reference

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19 February 2020

Harlan Robins

5

1 reference

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19 February 2020

Frederick A Matsen

6

1 reference

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19 February 2020

author name string

Connor O McCoy

1

1 reference

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19 February 2020

language of work or name

English

0 references

publication date

1 September 2015

1 reference

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Philosophical Transactions of the Royal Society B

19 February 2020

published in

1 reference

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19 February 2020

volume

370

1 reference

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19 February 2020

issue

1676

1 reference

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Coalescent tree imbalance and a simple test for selective sweeps based on microsatellite variation

19 February 2020

page(s)

20140244

0 references

cites work

1 reference

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

17 March 2017

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17 March 2017

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A new look at the statistical model identification

17 March 2017

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Estimating the Dimension of a Model

22 April 2017

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

22 April 2017

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A new method for calculating evolutionary substitution rates

7 April 2017

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Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences

7 April 2017

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Predicting evolution from the shape of genealogical trees

3 June 2018

1 reference

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πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios

3 June 2018

1 reference

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Reconstructing a B-Cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation

3 June 2018

1 reference

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A predictive fitness model for influenza

3 June 2018

1 reference

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Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors

3 June 2018

1 reference

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The promise and challenge of high-throughput sequencing of the antibody repertoire.

3 June 2018

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Integrating B cell lineage information into statistical tests for detecting selection in Ig sequences

3 June 2018

1 reference

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The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis

3 June 2018

1 reference

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Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data

3 June 2018

1 reference

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Immunosequencing: applications of immune repertoire deep sequencing

3 June 2018

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Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions.

3 June 2018

1 reference

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Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations

3 June 2018

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3 June 2018

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High-throughput sequencing of B- and T-lymphocyte antigen receptors in hematology.

3 June 2018

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3 June 2018

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FUBAR: a fast, unconstrained bayesian approximation for inferring selection

3 June 2018

1 reference

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Lineage structure of the human antibody repertoire in response to influenza vaccination

3 June 2018

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High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire.

3 June 2018

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A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection

3 June 2018

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Models and methods for analysis of lymphocyte repertoire generation, development, selection and evolution

3 June 2018

1 reference

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Quantifying selection in high-throughput Immunoglobulin sequencing data sets

3 June 2018

1 reference

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BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

3 June 2018

1 reference

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High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations

3 June 2018

1 reference

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Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

3 June 2018

1 reference

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Evolutionary fingerprinting of genes.

3 June 2018

1 reference

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A coming-of-age story: activation-induced cytidine deaminase turns 10.

3 June 2018

1 reference

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Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528421

IMGT, the international ImMunoGeneTics information system.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528421

Immunoglobulin somatic hypermutation

3 June 2018

1 reference

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Immunoglobulin locus silencing and allelic exclusion

3 June 2018

1 reference

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IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains

3 June 2018

1 reference

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The inference of antigen selection on Ig genes

3 June 2018

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Diversity in the CDR3 region of V(H) is sufficient for most antibody specificities

3 June 2018

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The CDR1 sequences of a major proportion of human germline Ig VH genes are inherently susceptible to amino acid replacement

3 June 2018

1 reference

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Inter- and intraclonal diversity in the antibody response to influenza hemagglutinin

3 June 2018

1 reference

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Shaping of human germline IgH repertoires revealed by deep sequencing

3 June 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2014.0244

Strong intrinsic biases towards mutation and conservation of bases in human IgVH genes during somatic hypermutation prevent statistical analysis of antigen selection

21 January 2018

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Problems in using statistical analysis of replacement and silent mutations in antibody genes for determining antigen-driven affinity selection.

21 January 2018

1 reference

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Lineage tree analysis of immunoglobulin variable-region gene mutations in autoimmune diseases: chronic activation, normal selection.

21 January 2018

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Novel analysis of clonal diversification in blood B cell and bone marrow plasma cell clones in immunoglobulin light chain amyloidosis.

21 January 2018

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IgTree: creating Immunoglobulin variable region gene lineage trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2014.0244

Antigen-driven selection in germinal centers as reflected by the shape characteristics of immunoglobulin gene lineage trees: a large-scale simulation study.

21 January 2018

1 reference

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Fully Bayesian tests of neutrality using genealogical summary statistics

21 January 2018

1 reference

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Using synthetic templates to design an unbiased multiplex PCR assay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2014.0244

An improved algorithm for matching biological sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2014.0244

Improved methods for detecting selection by mutation analysis of Ig V region sequences

21 January 2018

1 reference

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Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26194758

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSTB.2014.0244

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26194758%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

release_xzjcnkp3cvg7hojpo2srpfl7aa

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xzjcnkp3cvg7hojpo2srpfl7aa

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26194758%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

26194758

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26194758%20AND%20SRC:MED&resulttype=core&format=json