Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction (Q28829885)

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

10

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Alex K. Shalek

Alex K Shalek

13

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Ulf Landegren

12

Ulf Landegren

0 references

Spyros Darmanis

4

Spyros Darmanis

0 references

Kenneth J Livak

11

Kenneth J Livak

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author name string

Alex S Genshaft

1

0 references

Shuqiang Li

2

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Caroline J Gallant

3

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Sanjay M Prakadan

5

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Carly G K Ziegler

6

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Martin Lundberg

7

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Simon Fredriksson

8

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Joyce Hong

describes a project that uses

9

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language of work or name

English

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publication date

19 September 2016

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number of pages

15

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published in

Genome Biology

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volume

17

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issue

1

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page(s)

188

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cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

exact match

https://scigraph.springernature.com/pub.10.1186/s13059-016-1045-6

0 references

cites work

Single-cell RNA-seq: advances and future challenges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Heterogeneity in immune responses: from populations to single cells

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Nanobodies: natural single-domain antibodies

16 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

16 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Using gene expression noise to understand gene regulation

23 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell dissection of transcriptional heterogeneity in human colon tumors

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

ProteinSeq: high-performance proteomic analyses by proximity ligation and next generation sequencing

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Global quantification of mammalian gene expression control

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Digital Quantification of Proteins and mRNA in Single Mammalian Cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Simultaneous Multiplexed Measurement of RNA and Proteins in Single Cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Nuclear Retention of mRNA in Mammalian Tissues

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Fixed single-cell transcriptomic characterization of human radial glial diversity.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell chromatin accessibility reveals principles of regulatory variation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Scalable microfluidics for single-cell RNA printing and sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Expression profiling. Combinatorial labeling of single cells for gene expression cytometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Genomic variation. Impact of regulatory variation from RNA to protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

RNA imaging in living cells - methods and applications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Screening for noise in gene expression identifies drug synergies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Homogenous 96-plex PEA immunoassay exhibiting high sensitivity, specificity, and excellent scalability

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Quantitative PCR analysis of DNA, RNAs, and proteins in the same single cell

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Analysis of genes, transcripts, and proteins via DNA ligation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Dynamic proteomics of individual cancer cells in response to a drug.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Probing the active site steric flexibility of HIV-1 reverse transcriptase: different constraints for DNA- versus RNA-templated synthesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

A microengraving method for rapid selection of single cells producing antigen-specific antibodies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Protein detection using proximity-dependent DNA ligation assays.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5027636

Phorbol esters from Jatropha meal triggered apoptosis, activated PKC-δ, caspase-3 proteins and down-regulated the proto-oncogenes in MCF-7 and HeLa cancer cell lines.

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1045-6

Epidermal growth factor receptor down-regulation induced by UVA in human keratinocytes does not require the receptor kinase activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1045-6

Caspase inhibition blocks human T cell proliferation by suppressing appropriate regulation of IL-2, CD25, and cell cycle-associated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1045-6

The histone deacetylase inhibitor MS-275 interacts synergistically with fludarabine to induce apoptosis in human leukemia cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1045-6

Detecting antigens by quantitative immuno-PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1045-6

Intron-exon structure of the MET gene and cloning of an alternatively-spliced Met isoform reveals frequent exon-skipping of a single large internal exon

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27640647

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Immunology. Flow cytometry, amped up

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27640647

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Opportunities for sensitive plasma proteome analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27640647

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13059-016-1045-6

1 reference

Dimensions Publication ID

3474402

1044555287

0 references

3474402

1 reference

1 reference

1 reference