Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data. (Q31133242)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

title

Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

author name string

Martin Barron

series ordinal

1

1 reference

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24 March 2020

language of work or name

English

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publication date

27 September 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

volume

6

1 reference

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24 March 2020

page(s)

33892

1 reference

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Creative Commons Attribution 4.0 International

24 March 2020

copyright license

start time

27 September 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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14 July 2018

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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

14 July 2018

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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

14 July 2018

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14 July 2018

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Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression

14 July 2018

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Defining cell types and states with single-cell genomics

14 July 2018

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Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

14 July 2018

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Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells

14 July 2018

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Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

14 July 2018

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Correcting gene expression data when neither the unwanted variation nor the factor of interest are observed

14 July 2018

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Computational assignment of cell-cycle stage from single-cell transcriptome data

14 July 2018

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Application of single-cell genomics in cancer: promise and challenges

14 July 2018

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BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

14 July 2018

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Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq.

14 July 2018

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Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells

14 July 2018

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Advances and applications of single-cell sequencing technologies

14 July 2018

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The BioMart community portal: an innovative alternative to large, centralized data repositories

14 July 2018

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Identification of cell types from single-cell transcriptomes using a novel clustering method.

14 July 2018

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Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

14 July 2018

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Orchestrating high-throughput genomic analysis with Bioconductor

14 July 2018

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Computational and analytical challenges in single-cell transcriptomics

14 July 2018

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Quantification of cell identity from single-cell gene expression profiles

14 July 2018

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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

14 July 2018

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Gene Ontology Consortium: going forward

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

14 July 2018

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Bayesian approach to single-cell differential expression analysis

14 July 2018

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Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis

14 July 2018

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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

14 July 2018

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Validation of noise models for single-cell transcriptomics

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

14 July 2018

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Entering the era of single-cell transcriptomics in biology and medicine

14 July 2018

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Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells

14 July 2018

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Accounting for technical noise in single-cell RNA-seq experiments.

14 July 2018

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Single-cell sequencing-based technologies will revolutionize whole-organism science

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

14 July 2018

1 reference

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Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Using control genes to correct for unwanted variation in microarray data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Tackling the widespread and critical impact of batch effects in high-throughput data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Adjustment of systematic microarray data biases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037372

The first five years of single-cell cancer genomics and beyond

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP33892

Reconstructing complex tissues from single-cell analyses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27670849

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP33892

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference

Dimensions Publication ID

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27670849%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference