Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans (Q33471424)

27 July 2017

Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans (English)

1 reference

27 July 2017

Caenorhabditis elegans

0 references

Coleen T Murphy

3

0 references

Curtis Huttenhower

object named as

Curtis Huttenhower

series ordinal

2

0 references

Olga Troyanskaya

series ordinal

4

object named as

Olga G Troyanskaya

1 reference

27 July 2017

Maria D Chikina

1

1 reference

27 July 2017

19 June 2009

1 reference

PLOS Computational Biology

27 July 2017

1 reference

27 July 2017

5

1 reference

27 July 2017

6

1 reference

27 July 2017

e1000417

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

start time

19 June 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Most mammalian mRNAs are conserved targets of microRNAs

21 June 2018

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An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans

21 June 2018

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Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy

21 June 2018

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21 June 2018

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Large-scale gene expression pattern analysis, in situ, in Caenorhabditis elegans

21 June 2018

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21 June 2018

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Tissue entrainment by feedback regulation of insulin gene expression in the endoderm of Caenorhabditis elegans

21 June 2018

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21 June 2018

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21 June 2018

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Left-right olfactory asymmetry results from antagonistic functions of voltage-activated calcium channels and the Raw repeat protein OLRN-1 in C. elegans

21 June 2018

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A universal framework for regulatory element discovery across all genomes and data types

21 June 2018

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High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

The embryonic muscle transcriptome of Caenorhabditis elegans

21 June 2018

1 reference

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Global analysis of patterns of gene expression during Drosophila embryogenesis

21 June 2018

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Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system

21 June 2018

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The Caenorhabditis elegans cell-cycle regulator ZYG-11 defines a conserved family of CUL-2 complex components

21 June 2018

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C. elegans G protein regulator RGS-3 controls sensitivity to sensory stimuli

21 June 2018

1 reference

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Genome-wide atlas of gene expression in the adult mouse brain

21 June 2018

1 reference

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The Galpha12-RGS RhoGEF-RhoA signalling pathway regulates neurotransmitter release in C. elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Identification of a gonadotropin-releasing hormone receptor orthologue in Caenorhabditis elegans

21 June 2018

1 reference

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The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine

21 June 2018

1 reference

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The eggshell is required for meiotic fidelity, polar-body extrusion and polarization of the C. elegans embryo

21 June 2018

1 reference

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Promotion of oogenesis and embryogenesis in the C. elegans gonad by EFL-1/DPL-1 (E2F) does not require LIN-35 (pRB).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Cell-type-specific signatures of microRNAs on target mRNA expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Genetic interactions due to constitutive and inducible gene regulation mediated by the unfolded protein response in C. elegans.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Regulation of miRNA expression during neural cell specification

21 June 2018

1 reference

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A gene expression fingerprint of C. elegans embryonic motor neurons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Whole-genome analysis of temporal gene expression during foregut development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

A first version of the Caenorhabditis elegans Promoterome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

A conserved protein network controls assembly of the outer kinetochore and its ability to sustain tension

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

A gene atlas of the mouse and human protein-encoding transcriptomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

The unfolded protein response in nutrient sensing and differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Complementary signaling pathways regulate the unfolded protein response and are required for C. elegans development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Insulin signalling and the regulation of glucose and lipid metabolism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

The microenvironment of the tumour-host interface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Nuclear receptors in nematodes: themes and variations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Regulation of DAF-2 receptor signaling by human insulin and ins-1, a member of the unusually large and diverse C. elegans insulin gene family

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Activation of hypodermal differentiation in the Caenorhabditis elegans embryo by GATA transcription factors ELT-1 and ELT-3

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Cytokinesis and midzone microtubule organization in Caenorhabditis elegans require the kinesin-like protein ZEN-4.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

A CBP/p300 homolog specifies multiple differentiation pathways in Caenorhabditis elegans.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

cis regulatory requirements for hypodermal cell-specific expression of the Caenorhabditis elegans cuticle collagen gene dpy-7.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Flies on steroids--Drosophila metamorphosis and the mechanisms of steroid hormone action

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

DNA-protein interactions in the Caenorhabditis elegans embryo: oocyte and embryonic factors that bind to the promoter of the gut-specific ges-1 gene.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Identification of C. elegans sensory ray genes using whole-genome expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

A gene expression map for Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

C. elegans dystroglycan DGN-1 functions in epithelia and neurons, but not muscle, and independently of dystrophin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Control of organ shape by a secreted metalloprotease in the nematode Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

The Caenorhabditis elegans GATA factor elt-1 is essential for differentiation and maintenance of hypodermal seam cells and for normal locomotion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Genome-wide prediction of C. elegans genetic interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Two neuronal, nuclear-localized RNA binding proteins involved in synaptic transmission

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

The C. elegans hmr-1 gene can encode a neuronal classic cadherin involved in the regulation of axon fasciculation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Postsynaptic requirement for Abl kinases in assembly of the neuromuscular junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

The Ras-MAPK pathway is important for olfaction in Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000417

The Caenorhabditis elegans LIN-26 protein is required to specify and/or maintain all non-neuronal ectodermal cell fates.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2692103

Three genes of the MAP kinase cascade, mek-2, mpk-1/sur-1 and let-60 ras, are required for meiotic cell cycle progression in Caenorhabditis elegans

31 October 2018

1 reference

12 December 2020

Fastcompare: a nonalignment approach for genome-scale discovery of DNA and mRNA regulatory elements using network-level conservation

1 reference

12 December 2020

Using the KEGG database resource

1 reference

12 December 2020

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

1 reference

12 December 2020

A systematic RNA interference screen reveals a cell migration gene network in C. elegans

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1000417

Identifiers

DOI

1 reference

journals/ploscb/ChikinaHMT09

27 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

27 July 2017

1 reference

PubMed ID

19543383