Interactions of alpha-helices with lipid bilayers: a review of simulation studies (Q33540597)

27 July 2017

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title

Interactions of alpha-helices with lipid bilayers: a review of simulation studies (English)

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27 July 2017

Biggin PC

1

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27 July 2017

Sansom MS

series ordinal

2

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27 July 2017

language of work or name

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1 February 1999

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27 July 2017

published in

Biophysical Chemistry

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27 July 2017

volume

76

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27 July 2017

issue

3

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27 July 2017

page(s)

161-183

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Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

27 July 2017

cites work

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7 January 2021

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7 January 2021

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7 January 2021

The X-ray crystal structure of the membrane protein prostaglandin H2 synthase-1

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7 January 2021

Structure and function of a squalene cyclase

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7 January 2021

NMR studies of the structure and dynamics of membrane-bound bacteriophage Pf1 coat protein

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7 January 2021

Insect defensins: inducible antibacterial peptides

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7 January 2021

Immune reactions in Drosophila and other insects: a model for innate immunity

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7 January 2021

Antibiotic peptides as mediators of innate immunity

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7 January 2021

Innate immunity in higher insects

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7 January 2021

Defensins: a family of antimicrobial and cytotoxic peptides

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7 January 2021

Structure and functions of channel-forming peptides: magainins, cecropins, melittin and alamethicin

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7 January 2021

Structure and orientation of the mammalian antibacterial peptide cecropin P1 within phospholipid membranes

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7 January 2021

Interaction of antimicrobial dermaseptin and its fluorescently labeled analogues with phospholipid membranes

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7 January 2021

Structure and orientation of the antibiotic peptide magainin in membranes by solid-state nuclear magnetic resonance spectroscopy

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7 January 2021

Orientational and aggregational states of magainin 2 in phospholipid bilayers.

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7 January 2021

Cooperative membrane insertion of magainin correlated with its cytolytic activity

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7 January 2021

Membrane pores induced by magainin

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7 January 2021

The biophysics of peptide models of ion channels

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7 January 2021

Structure and function of channel-forming peptaibols

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7 January 2021

A molecular model of membrane excitability

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7 January 2021

Mechanism of alamethicin insertion into lipid bilayers

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7 January 2021

Structure-function of the channel-forming colicins

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

A mechanism for toxin insertion into membranes is suggested by the crystal structure of the channel-forming domain of colicin E1

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7 January 2021

Rendering a membrane protein soluble in water: a common packing motif in bacterial protein toxins

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7 January 2021

The 'molten globule' state is involved in the translocation of proteins across membranes?

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Helix packing in membrane proteins

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7 January 2021

Alamethicin: A Peptide Model for Voltage Gating and Protein-Membrane Interactions

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7 January 2021

Acetylcholine receptor channel imaged in the open state

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7 January 2021

Modelling and simulation of ion channels: applications to the nicotinic acetylcholine receptor.

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7 January 2021

Crystal structure of colicin Ia

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7 January 2021

The spontaneous insertion of proteins into and across membranes: the helical hairpin hypothesis

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7 January 2021

The alpha-helix dipole and the properties of proteins

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7 January 2021

Effects of the alpha-helix dipole upon the functioning and structure of proteins and peptides

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7 January 2021

Major transmembrane movement associated with colicin Ia channel gating

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7 January 2021

Comparison of the conformation and orientation of alamethicin and melittin in lipid membranes

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7 January 2021

Peptides in membranes: Helicity and hydrophobicity

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7 January 2021

Simulation studies of alamethicin-bilayer interactions

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7 January 2021

Helix bending in alamethicin: molecular dynamics simulations and amide hydrogen exchange in methanol

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7 January 2021

The structure of a membrane-spanning polypeptide studied by molecular dynamics

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7 January 2021

Modeling of the structure of bacteriorhodopsin. A molecular dynamics study

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7 January 2021

Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model

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7 January 2021

A Monte Carlo model of fd and Pf1 coat proteins in lipid membranes

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Simulation of voltage-dependent interactions of alpha-helical peptides with lipid bilayers

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Molecular dynamics simulation of a bilayer of 200 lipids in the gel and in the liquid crystal phase

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

The structure and organization within the membrane of the helices composing the pore-forming domain of Bacillus thuringiensis delta-endotoxin are consistent with an "umbrella-like" structure of the pore

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

The alpha-helix dipole in membranes: a new gating mechanism for ion channels

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Influence of the membrane potential on the free energy of an intrinsic protein

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Evidence for voltage-dependent S4 movement in sodium channels

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7 January 2021

Transmembrane movement of the shaker K+ channel S4.

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7 January 2021

Insertion and hairpin formation of membrane proteins: a Monte Carlo study

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7 January 2021

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Hydrophobicity regained.

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7 January 2021

Spontaneous, pH-dependent membrane insertion of a transbilayer alpha-helix

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7 January 2021

Experimentally determined hydrophobicity scale for proteins at membrane interfaces

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7 January 2021

Glycine and beta-branched residues support and modulate peptide helicity in membrane environments

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7 January 2021

Folding proteins into membranes

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7 January 2021

Hydrogen bonding in helical polypeptides from molecular dynamics simulations and amide hydrogen exchange analysis: alamethicin and melittin in methanol

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7 January 2021

Interaction of small peptides with lipid bilayers

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7 January 2021

Lipid bilayer polypeptide interactions studied by molecular dynamics simulation

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7 January 2021

Synthetic amphiphilic peptide models for protein ion channels

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7 January 2021

Molecular dynamics simulation of a synthetic ion channel

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7 January 2021

Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

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7 January 2021

Molecular dynamics study of the LS3 voltage-gated ion channel

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7 January 2021

Identification of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cells

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7 January 2021

Simulation of the HIV-1 Vpu transmembrane domain as a pentameric bundle

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7 January 2021

Ion channels formed by HIV-1 Vpu: a modelling and simulation study

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7 January 2021

Molecular Architecture and Electrostatic Properties of a Bacterial Porin

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7 January 2021

The functions of tryptophan residues in membrane proteins

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7 January 2021

Lipid properties and the orientation of aromatic residues in OmpF, influenza M2, and alamethicin systems: molecular dynamics simulations

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7 January 2021

The M2 channel of influenza A virus: a molecular dynamics study

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7 January 2021

A transmembrane helix dimer: structure and implications

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7 January 2021

Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

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7 January 2021

Structure and dynamics of an amphiphilic peptide in a lipid bilayer: a molecular dynamics study

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7 January 2021

Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer

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7 January 2021

Molecular dynamics of individual alpha-helices of bacteriorhodopsin in dimyristol phosphatidylocholine. I. Structure and dynamics

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7 January 2021

Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins

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7 January 2021

Molecular dynamics simulations of individual alpha-helices of bacteriorhodopsin in dimyristoylphosphatidylcholine. II. Interaction energy analysis

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7 January 2021

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Alamethicin helices in a bilayer and in solution: molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

A model recognition approach to the prediction of all-helical membrane protein structure and topology

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

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7 January 2021

Prediction of transmembrane segments in proteins utilising multiple sequence alignments

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7 January 2021

Topology prediction for helical transmembrane proteins at 86% accuracy

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7 January 2021

Viral ion channels: molecular modeling and simulation

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7 January 2021

Three-dimensional architecture and gating mechanism of a K+ channel studied by EPR spectroscopy

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7 January 2021

Molecular dynamics study of phospholipase A2 on a membrane surface.

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7 January 2021

Interaction of an amphiphilic peptide with a phospholipid bilayer surface by molecular dynamics simulation study

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7 January 2021

Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane

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7 January 2021

Peptide-bilayer interactions:- simulation studies

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7 January 2021

Structure and Fluctuations of Bacteriorhodopsin in the Purple Membrane: A Molecular Dynamics Study

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7 January 2021

Molecular dynamics simulations of water within models of ion channels

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Influenza A virus M2 ion channel protein: a structure-function analysis

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity

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7 January 2021

The secondary structure of influenza A M2 transmembrane domain. A circular dichroism study

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Transmembrane four-helix bundle of influenza A M2 protein channel: structural implications from helix tilt and orientation

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

The influenza A virus M2 channel: a molecular modeling and simulation study.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Two models of the influenza A M2 channel domain: verification by comparison

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Simulations of the M2 channel for influenza A virus.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Activation of the M2 ion channel of influenza virus: a role for the transmembrane domain histidine residue

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7 January 2021

Selective proton permeability and pH regulation of the influenza virus M2 channel expressed in mouse erythroleukaemia cells.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Modelling the packing of transmembrane helices: application to aquaporin-1

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Aquaporins: water channel proteins of plant and animal cells

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Three-dimensional organization of a human water channel

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

The three-dimensional structure of aquaporin-1.

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https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Modelling membrane proteins using structural restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

Models of lipid-protein interactions in membranes

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2898%2900233-6

7 January 2021

10.1016/S0301-4622(98)00233-6

Identifiers

DOI

1 reference

27 July 2017

1 reference