Mutation patterns in cancer genomes (Q33564395)

28 July 2017

title

Mutation patterns in cancer genomes (English)

1 reference

28 July 2017

Alan F Rubin

1

0 references

author name string

Phil Green

series ordinal

2

1 reference

28 July 2017

language of work or name

English

0 references

publication date

7 December 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

28 July 2017

published in

1 reference

28 July 2017

volume

106

1 reference

28 July 2017

issue

51

1 reference

28 July 2017

page(s)

21766-21770

1 reference

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Transcription-coupled DNA repair: two decades of progress and surprises

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

An integrated genomic analysis of human glioblastoma multiforme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

The UCSC Genome Browser Database: 2008 update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

The genomic landscapes of human breast and colorectal cancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Novel markers for differentiation of lobular and ductal invasive breast carcinomas by laser microdissection and microarray analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Patterns of somatic mutation in human cancer genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

NCBI GEO: mining tens of millions of expression profiles--database and tools update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

The consensus coding sequences of human breast and colorectal cancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Initial sequence of the chimpanzee genome and comparison with the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Repair and genetic consequences of endogenous DNA base damage in mammalian cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Structure, function and evolution of CpG island promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Dependence of mutational asymmetry on gene-expression levels in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

CpG island hypermethylation and tumor suppressor genes: a booming present, a brighter future

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Aberrant CpG-island methylation has non-random and tumour-type-specific patterns.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Mutagenic and epigenetic effects of DNA methylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Approximate interval estimation of the ratio of binomial parameters: a review and corrections for skewness

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

CpG-rich islands and the function of DNA methylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2799788

Wide variations in neighbor-dependent substitution rates.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912499106

Transcription-associated mutational asymmetry in mammalian evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912499106

A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912499106

Role in tumorigenesis of silent mutations in the TP53 gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912499106

Comment on "The consensus coding sequences of human breast and colorectal cancers".

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912499106

Patterns of nucleotide substitution in pseudogenes and functional genes

21 January 2018

1 reference

12 December 2020

The influence of nearest neighbors on the rate and pattern of spontaneous point mutations

1 reference

12 December 2020

Comment on "The consensus coding sequences of human breast and colorectal cancers"

1 reference

12 December 2020

Comment on "The consensus coding sequences of human breast and colorectal cancers"

1 reference

12 December 2020

Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences

1 reference

12 December 2020

Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0912499106

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference