Optimized Method for Robust Transcriptome Profiling of Minute Tissues Using Laser Capture Microdissection and Low-Input RNA-Seq (Q33789983)

29 July 2017

Optimized Method for Robust Transcriptome Profiling of Minute Tissues Using Laser Capture Microdissection and Low-Input RNA-Seq (English)

1 reference

29 July 2017

0 references

1 reference

1 reference

James M Ward

3

0 references

Shannon Farris

object named as

Shannon Farris

series ordinal

1

0 references

Serena M. Dudek

object named as

Serena M Dudek

series ordinal

4

0 references

author name string

Yu Wang

series ordinal

2

1 reference

29 July 2017

13 June 2017

1 reference

Frontiers in Molecular Neuroscience

29 July 2017

1 reference

29 July 2017

10

1 reference

29 July 2017

185

1 reference

PubMed ID

28659759

describes a project that uses

29 July 2017

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Targeted Transcriptional Profiling of Microdissected Biopsy Specimens Representing Early Colonic Neoplasia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Recovery of high-quality RNA from laser capture microdissected human and rodent pancreas

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

RNA Amplification Protocol Leads to Biased Polymerase Chain Reaction Results Especially for Low-Copy Transcripts of Human Bone Marrow-Derived Stromal Cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

IVT-seq reveals extreme bias in RNA sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

RNA-seq: impact of RNA degradation on transcript quantification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

deepTools: a flexible platform for exploring deep-sequencing data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Applying thiouracil tagging to mouse transcriptome analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Library preparation methods for next-generation sequencing: tone down the bias

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Comparative analysis of RNA sequencing methods for degraded or low-input samples

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Mouse TU tagging: a chemical/genetic intersectional method for purifying cell type-specific nascent RNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

An integrated encyclopedia of DNA elements in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Whole-transcriptome RNAseq analysis from minute amount of total RNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Improvement of tissue preparation for laser capture microdissection: application for cell type-specific miRNA expression profiling in colorectal tumors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Transcript length bias in RNA-seq data confounds systems biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Laser capture microdissection: molecular analysis of tissue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

Laser capture microdissection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5468370

The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging

28 July 2018

1 reference

https://api.crossref.org/works/10.3389%2FFNMOL.2017.00185

A robust RNA integrity-preserving staining protocol for laser capture microdissection of endometrial cancer tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFNMOL.2017.00185

High quality RNA from multiple brain regions simultaneously acquired by laser capture microdissection

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFNMOL.2017.00185

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFNMOL.2017.00185

Laser-capture microdissection

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28659759

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FNMOL.2017.00185

1 reference

29 July 2017

1 reference

29 July 2017

1 reference

PubMed ID

28659759