PONDR-FIT: a meta-predictor of intrinsically disordered amino acids (Q33902242)

29 July 2017

title

PONDR-FIT: a meta-predictor of intrinsically disordered amino acids (English)

1 reference

29 July 2017

Roland L Dunbrack

2

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Vladimir N. Uversky

series ordinal

5

object named as

Vladimir N Uversky

1 reference

29 July 2017

Bin Xue

1

1 reference

29 July 2017

Robert W Williams

series ordinal

3

1 reference

29 July 2017

A Keith Dunker

series ordinal

4

1 reference

29 July 2017

language of work or name

English

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publication date

25 January 2010

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Biochimica et Biophysica Acta

29 July 2017

published in

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29 July 2017

volume

1804

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29 July 2017

issue

4

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29 July 2017

page(s)

996-1010

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Influence of sequence changes and environment on intrinsically disordered proteins.

29 July 2017

cites work

1 reference

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Predicting intrinsic disorder in proteins: an overview

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Natively unstructured loops differ from other loops

5 July 2018

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5 July 2018

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Towards proteomic approaches for the identification of structural disorder

5 July 2018

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Predicting disordered regions in proteins based on decision trees of reduced amino acid composition.

5 July 2018

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Intrinsic disorder and functional proteomics

5 July 2018

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5 July 2018

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An unusual twin-his arrangement in the pore of ammonia channels is essential for substrate conductance

5 July 2018

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5 July 2018

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Crystal structure of SV40 large T-antigen bound to p53: interplay between a viral oncoprotein and a cellular tumor suppressor

5 July 2018

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Crystal structure of the monomeric porin OmpG

5 July 2018

1 reference

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Length-dependent prediction of protein intrinsic disorder.

5 July 2018

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Crystal structure of IRF-3 in complex with CBP.

5 July 2018

1 reference

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The effect of long-range interactions on the secondary structure formation of proteins

5 July 2018

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5 July 2018

The many faces of CREB

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5 July 2018

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5 July 2018

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5 July 2018

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Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

5 July 2018

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5 July 2018

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5 July 2018

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Protein disorder prediction: implications for structural proteomics

5 July 2018

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5 July 2018

1 reference

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Application of 3D-Jury, GRDB, and Verify3D in fold recognition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Specificity determinants of recruitment peptides bound to phospho-CDK2/cyclin A

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Identification and functions of usefully disordered proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Structure of a Sir2 enzyme bound to an acetylated p53 peptide

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Intrinsic disorder and protein function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

A new zinc binding fold underlines the versatility of zinc binding modules in protein evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Structural basis for Hif-1 alpha /CBP recognition in the cellular hypoxic response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Structure of the 53BP1 BRCT region bound to p53 and its comparison to the Brca1 BRCT structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Transcriptional regulation by the phosphorylation-dependent factor CREB

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Intrinsically disordered protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Sequence complexity of disordered protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Why are "natively unfolded" proteins unstructured under physiologic conditions?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Solution structure of the TAZ2 (CH3) domain of the transcriptional adaptor protein CBP

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Structure of the negative regulatory domain of p53 bound to S100B(betabeta)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

CREB: a stimulus-induced transcription factor activated by a diverse array of extracellular signals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

The PSIPRED protein structure prediction server

5 July 2018

1 reference

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Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2882806

Crystallization and structure solution of p53 (residues 326-356) by molecular replacement using an NMR model as template

5 July 2018

1 reference

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Conformational preferences in the Ser133-phosphorylated and non-phosphorylated forms of the kinase inducible transactivation domain of CREB

5 July 2018

1 reference

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Solution Structure of the KIX Domain of CBP Bound to the Transactivation Domain of CREB: A Model for Activator:Coactivator Interactions

5 July 2018

1 reference

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Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

5 July 2018

1 reference

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Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2

5 July 2018

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ZZ and TAZ: new putative zinc fingers in dystrophin and other proteins

5 July 2018

1 reference

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CREB and the formation of long-term memory

5 July 2018

1 reference

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Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations

5 July 2018

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Prediction of disordered regions in proteins based on the meta approach

5 July 2018

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29 October 2018

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Uncovering the unfoldome: enriching cell extracts for unstructured proteins by acid treatment

29 October 2018

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Assessment of disorder predictions in CASP6.

29 October 2018

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Coupled folding and binding with alpha-helix-forming molecular recognition elements

29 October 2018

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The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

29 October 2018

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Structures of p53 cancer mutants and mechanism of rescue by second-site suppressor mutations

29 October 2018

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Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb

29 October 2018

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Predicting intrinsic disorder from amino acid sequence

29 October 2018

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The protein trinity--linking function and disorder.

29 October 2018

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Local Structural Elements in the Mostly Unstructured Transcriptional Activation Domain of Human p53

29 October 2018

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Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation

10 December 2018

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Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

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Intrinsic protein disorder in complete genomes

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Prediction of boundaries between intrinsically ordered and disordered protein regions

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3D‐SHOTGUN: A novel, cooperative, fold‐recognition meta‐predictor

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Identifiers

DOI

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29 July 2017

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29 July 2017

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