The SmpB C-terminal tail helps tmRNA to recognize and enter stalled ribosomes (Q34118145)

31 July 2017

1 reference

title

The SmpB C-terminal tail helps tmRNA to recognize and enter stalled ribosomes (English)

1 reference

31 July 2017

Mickey R Miller

1

1 reference

PubMed ID

25228900

31 July 2017

Allen R Buskirk

series ordinal

2

1 reference

31 July 2017

2 September 2014

1 reference

Frontiers in Microbiology

31 July 2017

1 reference

31 July 2017

5

1 reference

31 July 2017

462

1 reference

Rejection of tmRNA·SmpB after GTP hydrolysis by EF-Tu on ribosomes stalled on intact mRNA

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

An unusual mechanism for EF-Tu activation during tmRNA-mediated ribosome rescue

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

A-site mRNA cleavage is not required for tmRNA-mediated ssrA-peptide tagging

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Small molecule inhibitors of trans-translation have broad-spectrum antibiotic activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

tmRNA is essential in Shigella flexneri

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Translation drives mRNA quality control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Structural Basis for the Rescue of Stalled Ribosomes: Structure of YaeJ Bound to the Ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Decoding in the Absence of a Codon by tmRNA and SmpB in the Ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Structural basis of highly conserved ribosome recycling in eukaryotes and archaea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

The role of SmpB and the ribosomal decoding center in licensing tmRNA entry into stalled ribosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

tmRNA-SmpB: a journey to the centre of the bacterial ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Role of the C-terminal tail of SmpB in the early stage of trans-translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

RNase II is important for A-site mRNA cleavage during ribosome pausing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

SmpB contributes to reading frame selection in the translation of transfer-messenger RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Fidelity at the molecular level: lessons from protein synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Ribosome hijacking: a role for small protein B during trans-translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Amino acid starvation and colicin D treatment induce A-site mRNA cleavage in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Functional SmpB-ribosome interactions require tmRNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

The tmRNA system for translational surveillance and ribosome rescue.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

The ribosome's response to codon-anticodon mismatches.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

A Role for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

The tmRDB and SRPDB resources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Ribosome rescue by tmRNA requires truncated mRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Selection of tRNA by the ribosome requires a transition from an open to a closed form

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

SmpB functions in various steps of trans-translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

The path of messenger RNA through the ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Recognition of cognate transfer RNA by the 30S ribosomal subunit

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

A ratchet-like inter-subunit reorganization of the ribosome during translocation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

ssrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Global transposon mutagenesis and a minimal Mycoplasma genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4151336

Simultaneous and functional binding of SmpB and EF-Tu-TP to the alanyl acceptor arm of tmRNA.

5 July 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrA- and ArfA-mediated pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Interaction of SmpB with ribosome from directed hydroxyl radical probing

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00462

SmpB triggers GTP hydrolysis of elongation factor Tu on ribosomes by compensating for the lack of codon-anticodon interaction during trans-translation initiation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25228900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ArfA recruits RF2 into stalled ribosomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25228900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25228900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FMICB.2014.00462

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

25228900