Genomics of ecological adaptation in cactophilic Drosophila. (Q35047581)

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26 February 2020

title

Genomics of ecological adaptation in cactophilic Drosophila (English)

1 reference

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26 February 2020

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19

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23

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Núria Rius

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Alejandra Delprat Obeaga

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6

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Sònia Casillas

7

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Raquel Egea

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Francisco J Ruiz-Ruano

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Josefa Cabrero

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Jordi Garcia-Mas

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Juan Pedro M Camacho

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Cédric Feschotte

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26 February 2020

Jerônimo Conceicão Ruiz

18

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Jeronimo C Ruiz

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Andrew G Clark

27

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ORCID Public Data File 2021

author name string

Yolanda Guillén

1

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Anna Williford

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Francesc Muyas

5

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Miquel Ràmia

8

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Barbara Negre

10

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Gisela Mir

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Jordi Camps

12

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Valentí Moncunill

13

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Leonardo G de Lima

16

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Guilherme B Dias

17

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Marta Gut

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Ivo G Gut

22

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Gustavo C S Kuhn

25

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Esther Betrán

28

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Antonio Barbadilla

29

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Alfredo Ruiz

30

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26 February 2020

publication date

31 December 2014

1 reference

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Genome Biology and Evolution

26 February 2020

published in

1 reference

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26 February 2020

volume

7

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26 February 2020

issue

1

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26 February 2020

page(s)

349-366

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describes a project that uses

26 February 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

maintained by WikiProject

1 reference

Radiation of the Drosophila nannoptera species group in Mexico

1 reference

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Deciphering life history transcriptomes in different environments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The life cycle of Drosophila orphan genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Ecological genomics of host shifts in Drosophila mojavensis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Detecting natural selection in genomic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

FlyBase 102--advanced approaches to interrogating FlyBase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

De novo ORFs in Drosophila are important to organismal fitness and evolved rapidly from previously non-coding sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

New genes as drivers of phenotypic evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Divergence in olfactory host plant preference in D. mojavensis in response to cactus host use.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Circadian genes differentially affect tolerance to ethanol in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Functional genomic and phenotypic responses to desiccation in natural populations of a desert drosophilid

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Phylogenetic patterns of geographical and ecological diversification in the subgenus Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Circadian rhythms and endocrine functions in adult insects

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

GapFiller: a de novo assembly approach to fill the gap within paired reads

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Mutations in the neverland gene turned Drosophila pachea into an obligate specialist species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

New genes expressed in human brains: implications for annotating evolving genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Sex-specific adaptation drives early sex chromosome evolution in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Proto-genes and de novo gene birth

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Model-based comparisons of phylogeographic scenarios resolve the intraspecific divergence of cactophilic Drosophila mojavensis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The Drosophila melanogaster Genetic Reference Panel

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Hundreds of putatively functional small open reading frames in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Inferring the history of interchromosomal gene transposition in Drosophila using n-dimensional parsimony

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The evolutionary origin of orphan genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

DNA amount of X and B chromosomes in the grasshoppers Eyprepocnemis plorans and Locusta migratoria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The developmental transcriptome of Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

New genes in Drosophila quickly become essential

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Scaffolding pre-assembled contigs using SSPACE

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

GeneWaltz--A new method for reducing the false positives of gene finding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Using comparative genome analysis to identify problems in annotated microbial genomes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Inducible gene expression: diverse regulatory mechanisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Identification of Drosophila Yin and PEPT2 as evolutionarily conserved phagosome-associated muramyl dipeptide transporters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Ethanol-regulated genes that contribute to ethanol sensitivity and rapid tolerance in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Genome size reduction can trigger rapid phenotypic evolution in invasive plants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

More than just orphans: are taxonomically-restricted genes important in evolution?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Unlocking the secrets of the genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Centromere-competent DNA: structure and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Pervasive natural selection in the Drosophila genome?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

TopHat: discovering splice junctions with RNA-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Evolution of the achaete-scute complex in insects: convergent duplication of proneural genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Duplication, selection and gene conversion in a Drosophila mojavensis female reproductive protein family

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Genetic changes accompanying the evolution of host specialization in Drosophila sechellia.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Convergent evolution of clustering of Iroquois homeobox genes across metazoans.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

DNA transposons and the evolution of eukaryotic genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Analysis of Drosophila species genome size and satellite DNA content reveals significant differences among strains as well as between species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Gene family evolution across 12 Drosophila genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Evolution of genes and genomes on the Drosophila phylogeny

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

A unified classification system for eukaryotic transposable elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

OrthoDB: the hierarchical catalog of eukaryotic orthologs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The quest for natural selection in the age of comparative genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

PAML 4: phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Evolutionary relationships of Drosophila mojavensis geographic host races and their sister species Drosophila arizonae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

HOM-C evolution in Drosophila: is there a need for Hox gene clustering?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Functional genomics of cactus host shifts in Drosophila mojavensis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

An integrated view of protein evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Cactophilic Drosophila in South America: a model for evolutionary studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The genesis and evolution of homeobox gene clusters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Molecular signatures of natural selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Repbase Update, a database of eukaryotic repetitive elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Genome sequencing in microfabricated high-density picolitre reactors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

A BAC-based physical map of the Drosophila buzzatii genome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Developmental gene amplification: insights into DNA replication and gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Automated generation of heuristics for biological sequence comparison

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Gene finding in novel genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Gene prediction with a hidden Markov model and a new intron submodel

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

An evolutionary analysis of orphan genes in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Vertebrate gene predictions and the problem of large genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Hox genes and the evolution of the arthropod body plan

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Sequential activation of signaling pathways during innate immune responses in Drosophila.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The relationship of protein conservation and sequence length

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The generic genome browser: a building block for a model organism system database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Transposable elements and the evolution of genome size in eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

An efficient algorithm for large-scale detection of protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Integrating genomic homology into gene structure prediction.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The Drosophila serido speciation puzzle: putting new pieces together

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The enhancer of split complex of Drosophila includes four Notch-regulated members of the bearded gene family

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Codon-substitution models for heterogeneous selection pressure at amino acid sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The genome sequence of Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Tandem repeats finder: a program to analyze DNA sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Evolutionary cytogenetics of the Drosophila buzzatii species complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Rapid isolation of Drosophila high molecular weight DNA to obtain genomic libraries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Evolution of the mojavensis cluster of cactophilic Drosophila with descriptions of two new species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

Involvement of cytochrome P450 in host-plant utilization by Sonoran Desert Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

ANTAGONISTIC PLEIOTROPIC EFFECT OF SECOND-CHROMOSOME INVERSIONS ON BODY SIZE AND EARLY LIFE-HISTORY TRAITS IN DROSOPHILA BUZZATII.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

The genomic rate of adaptive amino acid substitution in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Only one esterase of Drosophila melanogaster is likely to degrade juvenile hormone in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Ecological aspects of cactus triterpene glycosides I. Their effect on fitness components ofDrosophila mojavensis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Genome size diversity in the family Drosophilidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Premating isolation is determined by larval rearing substrates in cactophilic Drosophila mojavensis. IX. Host plant and population specific epicuticular hydrocarbon expression influences mate choice and sexual selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Proteomic analysis of Drosophila mojavensis male accessory glands suggests novel classes of seminal fluid proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Evolution of protein-coding genes in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Evolutionary genetics of invasive species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Multilocus nuclear sequences reveal intra- and interspecific relationships among chromosomally polymorphic species of cactophilic Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Is genome size influenced by colonization of new environments in dipteran species?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

The role of D1 like receptors in the regulation of juvenile hormone synthesis in Drosophila females with increased dopamine level.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

GRIMM: genome rearrangements web server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Diversification of takeout, a male-biased gene family in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Ortholog detection using the reciprocal smallest distance algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Using MUMmer to identify similar regions in large sequence sets.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

High-temperature stress and the evolution of thermal resistance in Drosophila.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316639

The evolutionary history of Drosophila buzzatti. XXVI. Macrogeographic patterns of inversion polymorphism in New World populations

25 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Comparative Genomics on the Drosophila Phylogenetic Tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU291

Aldehyde dehydrogenase is essential for both adult and larval ethanol resistance in Drosophila melanogaster

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25552534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A COMPARISON OF DROSOPHILA HABITATS ACCORDING TO THE PHYSIOLOGICAL ATTRIBUTES OF THE ASSOCIATED YEAST COMMUNITIES.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25552534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolutionary History of Drosophila buzzatii. I. Natural Chromosomal Polymorphism in Colonized Populations of the Old World

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25552534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVU291

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25552534%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25552534%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

25552534

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25552534%20AND%20SRC:MED&resulttype=core&format=json