Accounting for reciprocal host-microbiome interactions in experimental science (Q36045875)

11 August 2017

Accounting for reciprocal host-microbiome interactions in experimental science (English)

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11 August 2017

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2

Herbert W Virgin

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PubMed ID

27279212

11 August 2017

Thaddeus S. Stappenbeck

series ordinal

1

object named as

Thaddeus S Stappenbeck

1 reference

PubMed ID

27279212

11 August 2017

language of work or name

English

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publication date

8 June 2016

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11 August 2017

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11 August 2017

534

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11 August 2017

7606

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11 August 2017

191-199

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https://scigraph.springernature.com/pub.10.1038/nature18285

11 August 2017

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Common genetic variants modulate pathogen-sensing responses in human dendritic cells

21 January 2018

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Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities

21 January 2018

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Viral interactions with the host and microbiota in the intestine

21 January 2018

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Interactions between the microbiota and the immune system

21 January 2018

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The virome in mammalian physiology and disease

21 January 2018

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Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

21 January 2018

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Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Biogeography and individuality shape function in the human skin metagenome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Metagenomics and personalized medicine

21 January 2018

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Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation

21 January 2018

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Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Norovirus triggered microbiota-driven mucosal inflammation in interleukin 10-deficient mice

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

The treatment-naive microbiome in new-onset Crohn's disease

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Disease-specific alterations in the enteric virome in inflammatory bowel disease

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut microbiota from twins discordant for obesity modulate metabolism in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut microbiota promote hematopoiesis to control bacterial infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Host microbiota constantly control maturation and function of microglia in the CNS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Control of brain development, function, and behavior by the microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

The gut microbiota regulates bone mass in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Temporal response of the human virome to immunosuppression and antiviral therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE18285

The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Tissue factor and PAR1 promote microbiota-induced intestinal vascular remodelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Coinfection. Virus-helminth coinfection reveals a microbiota-independent mechanism of immunomodulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Helminth infection reactivates latent γ-herpesvirus via cytokine competition at a viral promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Early infancy microbial and metabolic alterations affect risk of childhood asthma

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Evidence that asthma is a developmental origin disease influenced by maternal diet and bacterial metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Sequential Infection with Common Pathogens Promotes Human-like Immune Gene Expression and Altered Vaccine Response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Biphasic assembly of the murine intestinal microbiota during early development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Induction of Th17 cells by segmented filamentous bacteria in the murine intestine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Host genetic and environmental effects on mouse intestinal microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gender bias in autoimmunity is influenced by microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Microbial shifts in the aging mouse gut.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Homeostasis in intestinal epithelium is orchestrated by the circadian clock and microbiota cues transduced by TLRs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Unstressing intemperate models: how cold stress undermines mouse modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Heat or insulation: behavioral titration of mouse preference for warmth or access to a nest

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Using corticosteroids to reshape the gut microbiome: implications for inflammatory bowel diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut Microbiota Orchestrates Energy Homeostasis during Cold.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Consumption of acidic water alters the gut microbiome and decreases the risk of diabetes in NOD mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Diet dominates host genotype in shaping the murine gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

IL-22 deficiency alters colonic microbiota to be transmissible and colitogenic.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Microbial exposure during early life has persistent effects on natural killer T cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Pancreatic β-Cells Limit Autoimmune Diabetes via an Immunoregulatory Antimicrobial Peptide Expressed under the Influence of the Gut Microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Commensal bacteria calibrate the activation threshold of innate antiviral immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Microbiota regulates immune defense against respiratory tract influenza A virus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Gut-Pancreatic Axis AMPlified in Islets of Langerhans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Addressing the experimental variability associated with the microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Standardised animal models of host microbial mutualism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Does the gut microbiota have a role in type 1 diabetes? Early evidence from humans and animal models of the disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

NOD mouse colonies around the world--recent facts and figures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

The human microbiome project

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Time to cast a larger net.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Low-abundance biofilm species orchestrates inflammatory periodontal disease through the commensal microbiota and complement

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Metagenomic microbial community profiling using unique clade-specific marker genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Prokaryotes: the unseen majority

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Redefining chronic viral infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Leishmania RNA virus controls the severity of mucocutaneous leishmaniasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

The mycobiota: interactions between commensal fungi and the host immune system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Enteric protozoa in the developed world: a public health perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Chronic bystander infections and immunity to unrelated antigens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Viral immunity. Transkingdom control of viral infection and immunity in the mammalian intestine

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Context matters - the complex interplay between resistome genotypes and resistance phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

The phage-host arms race: shaping the evolution of microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Importance of prophages to evolution and virulence of bacterial pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Viral infection. Prevention and cure of rotavirus infection via TLR5/NLRC4-mediated production of IL-22 and IL-18

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Bacterial lipopolysaccharide binding enhances virion stability and promotes environmental fitness of an enteric virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Intestinal microbiota promote enteric virus replication and systemic pathogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Successful transmission of a retrovirus depends on the commensal microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Herpesvirus latency confers symbiotic protection from bacterial infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Cytomegalovirus infection enhances the immune response to influenza.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

TLR5-mediated sensing of gut microbiota is necessary for antibody responses to seasonal influenza vaccination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

HIV-1 VACCINES. Diversion of HIV-1 vaccine-induced immunity by gp41-microbiota cross-reactive antibodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Helminth-host immunological interactions: prevention and control of immune-mediated diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

Improving bioscience research reporting: The ARRIVE guidelines for reporting animal research

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

An enteric virus can replace the beneficial function of commensal bacteria

21 January 2018

1 reference

12 December 2020

MUCOSAL IMMUNOLOGY. Individual intestinal symbionts induce a distinct population of RORγ⁺ regulatory T cells.

1 reference

12 December 2020

Acidification of drinking water: its effects on selected biologic phenomena in male mice

1 reference

12 December 2020

Resurrection of endogenous retroviruses in antibody-deficient mice

1 reference

12 December 2020

Phenotypic complementation of genetic immunodeficiency by chronic herpesvirus infection

1 reference

12 December 2020

Prevalence of viral, bacterial and parasitological diseases in rats and mice used in research environments in Australasia over a 5-y period

1 reference

12 December 2020

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites

1 reference

https://api.crossref.org/works/10.1038%2FNATURE18285

7 January 2021

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Identifiers

DOI

10.1038/NATURE18285

1 reference

11 August 2017

1 reference

PubMed ID

27279212