Perspective on mutagenesis and repair: the standard model and alternate modes of mutagenesis (Q36139867)

12 August 2017

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title

Perspective on mutagenesis and repair: the standard model and alternate modes of mutagenesis (English)

1 reference

12 August 2017

Jeffrey H Miller

1

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12 August 2017

publication date

1 May 2005

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Critical Reviews in Biochemistry and Molecular Biology

12 August 2017

published in

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12 August 2017

volume

40

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12 August 2017

issue

3

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12 August 2017

page(s)

155-179

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Tandem genetic duplications in Salmonella typhimurium: Amplification of the histidine operon

12 August 2017

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Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon.

21 January 2018

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Inherited variants of MYH associated with somatic G:C-->T:A mutations in colorectal tumors

21 January 2018

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Mutator phenotypes in human colorectal carcinoma cell lines

21 January 2018

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Specificity of spontaneous mutations induced in mutA mutator cells

21 January 2018

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Repair and genetic consequences of endogenous DNA base damage in mammalian cells

21 January 2018

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Simple sequence repeats (microsatellites): mutational mechanisms and contributions to bacterial pathogenesis. A meeting review.

21 January 2018

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Mutations in Haemophilus influenzae mismatch repair genes increase mutation rates of dinucleotide repeat tracts but not dinucleotide repeat-driven pilin phase variation rates

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis

21 January 2018

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Tissue repair and stem cell renewal in carcinogenesis

21 January 2018

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Functional interactions and signaling properties of mammalian DNA mismatch repair proteins

21 January 2018

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Uracil DNA glycosylase activity is dispensable for immunoglobulin class switch

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

A role for sunlight in skin cancer: UV-induced p53 mutations in squamous cell carcinoma

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

Transcriptional mutagenesis induced by uracil and 8-oxoguanine in Escherichia coli.

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

Selective G to T mutations of p53 gene in hepatocellular carcinoma from southern Africa

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

Starvation-associated mutation in Escherichia coli: a spontaneous lesion hypothesis for "directed" mutation

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

Ancient horizontal gene transfer

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

Bacterial amino acid transport proteins: occurrence, functions, and significance for biotechnological applications

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

Somatic stem cells and the kinetics of mutagenesis and carcinogenesis

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230590954153

21 January 2018

The origin of mutants

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Nature of the SOS mutator activity: genetic characterization of untargeted mutagenesis in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

DNA damage-induced replication fork regression and processing in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Saturation of mismatch repair in the mutD5 mutator strain of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Demonstration of the production of frameshift and base-substitution mutations by quasipalindromic DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Translesion synthesis by RNA polymerases: occurrence and biological implications for transcriptional mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Origins and evolutionary relationships of retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Phylogenetic classification and the universal tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

A constant rate of spontaneous mutation in DNA-based microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Fidelity mechanisms in DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mutator strains of Escherichia coli, mutD and dnaQ, with defective exonucleolytic editing by DNA polymerase III holoenzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Recombination between short DNA homologies causes tandem duplication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Phylogenomics: intersection of evolution and genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Genetic requirements and mutational specificity of the Escherichia coli SOS mutator activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Identification of mismatch repair genes and their role in the development of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rebuttal: adaptive point mutation (Rosenberg and Hastings).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rebuttal: growth under selection stimulates Lac(+) reversion (Roth and Andersson).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Interactions among the Escherichia coli mutT, mutM, and mutY damage prevention pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

21 January 2018

DNA damage and repair

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The role of endogenous and exogenous DNA damage and mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Specialized DNA polymerases, cellular survival, and the genesis of mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Amplification of mutator cells in a population as a result of horizontal transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Replication infidelity during a single cycle of Ty1 retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Untangling the roots of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Structure of the MutL C-terminal domain: a model of intact MutL and its roles in mismatch repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rules for making human tumor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

AID is essential for immunoglobulin V gene conversion in a cultured B cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Adaptive amplification: an inducible chromosomal instability mechanism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Toxic waste disposal in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Occupational exposure to heavy metals: DNA damage induction and DNA repair inhibition prove co-exposures to cadmium, cobalt and lead as more dangerous than hitherto expected.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Cadmium is a mutagen that acts by inhibiting mismatch repair.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Biallelic germline mutations in MYH predispose to multiple colorectal adenoma and somatic G:C-->T:A mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Expansion and deletion of CTG repeats from human disease genes are determined by the direction of replication in E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Cell-cycle checkpoints and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mobile elements: drivers of genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Competition between MutY and mismatch repair at A x C mispairs In vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Epigenetics: surveillance team against cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Biochemistry and genetics of eukaryotic mismatch repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Horizontal gene transfer: the path to maturity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Lateral gene transfer: when will adolescence end?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Error‐prone DNA polymerase IV is controlled by the stress‐response sigma factor, RpoS, in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Genetic instabilities in human cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Aneuploidy vs. gene mutation hypothesis of cancer: recent study claims mutation but is found to support aneuploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Keynote: past, present, and future aspects of base excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Repair of endogenous DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Multiple mutations and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Intrinsic tumour suppression

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Proliferation of mutators in A cell population

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Involvement of genes of genome maintenance in the regulation of phase variation frequencies in Neisseria meningitidis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Connecting chromosomes, crisis, and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

G1 cell-cycle control and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

mutA and mutC: two mutator loci in Escherichia coli that stimulate transversions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

A repair system for 8-oxo-7,8-dihydrodeoxyguanine

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Temporary and permanent mutators lacking the mismatch repair system: the enhancement of mutators in cell populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mechanisms and biological effects of mismatch repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mismatch repair in replication fidelity, genetic recombination, and cancer biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Adaptive evolution of highly mutable loci in pathogenic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Escherichia coli cells expressing a mutant glyV (glycine tRNA) gene have a UVM-constitutive phenotype: implications for mechanisms underlying the mutA or mutC mutator effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Genome-wide molecular clock and horizontal gene transfer in bacterial evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The clonal evolution of tumor cell populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Lateral gene transfer and the nature of bacterial innovation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The Y-family of DNA polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The AID enzyme induces class switch recombination in fibroblasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mutation of a mutL homolog in hereditary colon cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Some mismatch repair activities in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

SOS Repair Hypothesis: Phenomenology of an Inducible DNA Repair Which is Accompanied by Mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

21 January 2018

Evolution-driving genes

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA, and SSB and is specialized for translesion replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Trinucleotide repeats and other microsatellites in yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Model for the participation of quasi-palindromic DNA sequences in frameshift mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Adaptive point mutation and adaptive amplification pathways in the Escherichia coli Lac system: stress responses producing genetic change

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rebuttal: adaptive mutation in Escherichia coli (Foster)

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rebuttal: growth under selection stimulates Lac(+) reversion (Roth and Andersson).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rebuttal: adaptive point mutation (Rosenberg and Hastings).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Rebuttal: adaptive mutation in Escherichia coli (Foster).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Adaptive mutation: how growth under selection stimulates Lac(+) reversion by increasing target copy number

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mechanisms of mutagenesis in the Escherichia coli mutator mutD5: role of DNA mismatch repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Identification of the epsilon-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: a fidelity subunit for DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mutator tRNAs are encoded by the Escherichia coli mutator genes mutA and mutC: a novel pathway for mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Evolution of high mutation rates in experimental populations of E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Managing DNA polymerases: coordinating DNA replication, DNA repair, and DNA recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

To be a mutator, or how pathogenic and commensal bacteria can evolve rapidly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Role of mutator alleles in adaptive evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Have environmental mutagens caused oncomutations in people?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Editing at the crossroad of innate and adaptive immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Occurrence and structure-function relationship of pentameric short sequence repeats in microbial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Characterization of the Escherichia coli AaeAB efflux pump: a metabolic relief valve?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Identification of endogenous retroviral reading frames in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

A novel mutational hotspot in a natural quasipalindrome in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Genome-wide somatic hypermutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Early B-cell development in chickens, sheep and rabbits

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Molecular basis of genetic instability of triplet repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Genetic rearrangements and gene amplification in Escherichia coli: DNA sequences at the junctures of amplified gene fusions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Thermal Enhancement of Ultraviolet Mutability in a tif-1 uvrA Derivative of Escherichia coli B/r: Evidence That Ultraviolet Mutagenesis Depends upon an Inducible Function

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

21 January 2018

Human DNA repair genes

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

A plethora of lesion-replicating DNA polymerases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Mismatch repair proteins MutS and MutL inhibit RecA-catalyzed strand transfer between diverged DNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Identification of mutator genes and mutational pathways in Escherichia coli using a multicopy cloning approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Spontaneous hotspot mutations resistant to mismatch correction in Escherichia coli: transcription-dependent mutagenesis involving template-switching mechanisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

21 January 2018

Aneuploidy and cancer

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Enzymes of evolutionary change

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

Evolution: A is for adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

21 January 2018

mutY 'directs' mutation?

1 reference

https://api.crossref.org/works/10.1080%2F10409230590954153

10.1080/10409230590954153

21 January 2018

Identifiers

DOI

1 reference

12 August 2017

1 reference