Rate theories for biologists (Q36520904)

14 August 2017

1 reference

title

Rate theories for biologists (English)

1 reference

14 August 2017

Huan-Xiang Zhou

1

1 reference

14 August 2017

1 May 2010

1 reference

Quarterly Reviews of Biophysics

14 August 2017

1 reference

14 August 2017

43

1 reference

14 August 2017

219-293

1 reference

14 August 2017

2

1 reference

The folding transition-state ensemble of a four-helix bundle protein: helix propensity as a determinant and macromolecular crowding as a probe.

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Method to Predict Crowding Effects by Postprocessing Molecular Dynamics Trajectories: Application to the Flap Dynamics of HIV-1 Protease.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The gates of ion channels and enzymes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Translational and rotational diffusion of a small globular protein under crowded conditions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Cell type-specific importance of ras-c-raf complex association rate constants for MAPK signaling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Conformational heterogeneity of the M2 proton channel and a structural model for channel activation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Theory of free energy and entropy in noncovalent binding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Dissection of the high rate constant for the binding of a ribotoxin to the ribosome.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Effect of macromolecular crowding on reaction rates: a computational and theoretical study

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Fundamental aspects of protein-protein association kinetics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Theory, analysis, and interpretation of single-molecule force spectroscopy experiments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The effects of macromolecular crowding on the mechanical stability of protein molecules.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Motion of a DNA sliding clamp observed by single molecule fluorescence spectroscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Cooperativity and specificity in enzyme kinetics: a single-molecule time-based perspective

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Transition networks for modeling the kinetics of conformational change in macromolecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Direct observation of markovian behavior of the mechanical unfolding of individual proteins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Direct observation of hierarchical folding in single riboswitch aptamers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Theoretical and computational models of biological ion channels

30 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

30 September 2017

https://api.crossref.org/works/10.1017%2FS0033583510000120

7 January 2021

Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Molecular motors: a theorist's perspective

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Energy landscape and transition state of protein-protein association

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A quantitative analysis of single protein-ligand complex separation with the atomic force microscope

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule kinetics reveals signatures of half-sites reactivity in dihydroorotate dehydrogenase A catalysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

High-throughput affinity ranking of antibodies using surface plasmon resonance microarrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Conformation coupled enzyme catalysis: single-molecule and transient kinetics investigation of dihydrofolate reductase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A structure-based model for the synthesis and hydrolysis of ATP by F1-ATPase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

How do biomolecular systems speed up and regulate rates?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Observation of a Power-Law Memory Kernel for Fluctuations within a Single Protein Molecule

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The kinetics of PDZ domain-ligand interactions and implications for the binding mechanism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Phi values in protein-folding kinetics have energetic and structural components.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Molecular crowding enhances native state stability and refolding rates of globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Stretched exponential decay and correlations in the catalytic activity of fluctuating single lipase molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Recognition and selection of tRNA in translation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Optimizing transport of metabolites through large channels: molecular sieves with and without binding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Force history dependence of receptor-ligand dissociation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Torque generation by the Fo motor of the sodium ATPase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Nanopore unzipping of individual DNA hairpin molecules.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

How do site-specific DNA-binding proteins find their targets?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Rotation of F1-ATPase: how an ATP-driven molecular machine may work

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Cooperativity in two-state protein folding kinetics.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule and transient kinetics investigation of the interaction of dihydrofolate reductase with NADPH and dihydrofolate

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Kinesin walks hand-over-hand

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Proton conduction through the M2 protein of the influenza A virus; a quantitative, mechanistic analysis of experimental data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Concerted simulations reveal how peroxidase compound III formation results in cellular oscillations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A microscopic view of ion conduction through the K+ channel.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Quantitative Account of the Enhanced Affinity of Two Linked scFvs Specific for Different Epitopes on the Same Antigen

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Glycosylation of erythropoietin affects receptor binding kinetics: role of electrostatic interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Ion channel gating: a first-passage time analysis of the Kramers type

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The physics of molecular motors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Kinetics of association of anti-lysozyme monoclonal antibody D44.1 and hen-egg lysozyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Analysis of the interactions of human ribonuclease inhibitor with angiogenin and ribonuclease A by mutagenesis: importance of inhibitor residues inside versus outside the C-terminal "hot spot"

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Mechanism of the single-headed processivity: diffusional anchoring between the K-loop of kinesin and the C terminus of tubulin.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Stable exposure of the coreceptor-binding site in a CD4-independent HIV-1 envelope protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

ATP synthase and other motor proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Sequence-dependent mechanics of single DNA molecules.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Mechanical and chemical unfolding of a single protein: a comparison

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule enzymatic dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Conformation gating as a mechanism for enzyme specificity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A statistical mechanical model for beta-hairpin kinetics.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Design of fast enzymes by optimizing interaction potential in active site.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Folding-unfolding transitions in single titin molecules characterized with laser tweezers.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Thermodynamics and kinetics of a Brownian motor

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Photobleaching recovery and anisotropy decay of green fluorescent protein GFP-S65T in solution and cells: cytoplasmic viscosity probed by green fluorescent protein translational and rotational diffusion

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Dynamic strength of molecular adhesion bonds

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Theory and simulation of the time-dependent rate coefficients of diffusion-influenced reactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Global and local determinants for the kinetics of interleukin-4/interleukin-4 receptor alpha chain interaction. A biosensor study employing recombinant interleukin-4-binding protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Simulation of the kinetics of ligand binding to a protein by molecular dynamics: geminate rebinding of nitric oxide to myoglobin.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Brownian dynamics study of the influences of electrostatic interaction and diffusion on protein-protein association kinetics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Dissection of the human acetylcholinesterase active center determinants of substrate specificity. Identification of residues constituting the anionic site, the hydrophobic site, and the acyl pocket

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Energetics of Shaker K channels block by inactivation peptides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Kinetic and affinity limits on antibodies produced during immune responses

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Influence of protein surface charge on the bimolecular kinetics of a potassium channel peptide inhibitor

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Simple model of protein folding kinetics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Mechanism of charybdotoxin block of a voltage-gated K+ channel.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Role of diffusion in ligand binding to macromolecules and cell-bound receptors

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The lac repressor-operator interaction. 3. Kinetic studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Diffusion in a rough potential

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Interpretation of biological ion channel flux data--reaction-rate versus continuum theory

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Kinetics of protein-protein association explained by Brownian dynamics computer simulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Mode of action of iberiotoxin, a potent blocker of the large conductance Ca(2+)-activated K+ channel

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Effect of rotation on the diffusion-controlled rate of ligand-protein association

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The one-dimensional diffusion coefficient of proteins absorbed on DNA. Hydrodynamic considerations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Models for the Specific Adhesion of Cells to Cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Electrostatic rate enhancement and transient complex of protein-protein association

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Evidence for the importance of electrostatics in the function of two distinct families of ribosome inactivating toxins

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The influence of macromolecular crowding on HIV-1 protease internal dynamics

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Separating the contribution of translational and rotational diffusion to protein association

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Association and dissociation kinetics of colicin E3 and immunity protein 3: Convergence of theory and experiment

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Electrostatic dependence of the thrombin-thrombomodulin interaction

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Enhancement of protein-protein association rate by interaction potential: accuracy of prediction based on local Boltzmann factor

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Electrostatic influence on the kinetics of ligand binding to acetylcholinesterase. Distinctions between active center ligands and fasciculin

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Simulation of the diffusional association of barnase and barstar.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Orientation constraints in diffusion-limited macromolecular association. The role of surface diffusion as a rate-enhancing mechanism

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Rate enhancement by guided diffusion. Chain length dependence of repressor-operator association rates

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Influence of macromolecular crowding on protein-protein association rates--a Brownian dynamics study

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A minimum-reaction-flux solution to master-equation models of protein folding

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Coarse master equations for peptide folding dynamics.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

When does the Michaelis-Menten equation hold for fluctuating enzymes?

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A simple theory of motor protein kinetics and energetics

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule Michaelis-Menten equations.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Intrinsic rates and activation free energies from single-molecule pulling experiments.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Kramers model with a power-law friction kernel: dispersed kinetics and dynamic disorder of biochemical reactions.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Diffusional encounter of barnase and barstar

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule unfolding force distributions reveal a funnel-shaped energy landscape

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Amino acid-dependent transfer RNA affinity in a class I aminoacyl-tRNA synthetase

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Association and dissociation kinetics for CheY interacting with the P2 domain of CheA.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Simple physical models connect theory and experiment in protein folding kinetics

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Quantitative analysis of the effect of salt concentration on enzymatic catalysis.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Reversible unfolding of single RNA molecules by mechanical force

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

A simple theory of motor protein kinetics and energetics. II.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

The reaction cycle of GroEL and GroES in chaperonin-assisted protein folding.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 1. Diffusion-controlled association and femtomolar binding for the cognate complex.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Effective charge on acetylcholinesterase active sites determined from the ionic strength dependence of association rate constants with cationic ligands.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Fluctuations of barrier structure in ionic channels

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3540998

Exact stochastic simulation of coupled chemical reactions

21 September 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

The Activated Complex in Chemical Reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Some applications of the transition state method to the calculation of reaction velocities, especially in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

On the transition coordinate for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Thermodynamic Consequences of Bipartite Immunity Protein Binding to the Ribosomal Ribonuclease Colicin E3†

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Generalized fundamental measure theory for atomistic modeling of macromolecular crowding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

A simple min-cut algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Reciprocal Relations in Irreversible Processes. II

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

A General Expression for Bimolecular Association Rates with Orientational Constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Reaction-rate theory: fifty years after Kramers

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Very Rapid, Ionic Strength-Dependent Association and Folding of a Heterodimeric Leucine Zipper†

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Master Equation Approach to Protein Folding and Kinetic Traps

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Chemically Driven Motility of Brownian Particles

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

A 240-Fold Electrostatic Rate-Enhancement for Acetylcholinesterase−Substrate Binding Can Be Predicted by the Potential within the Active Site

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Protein folding and binding in confined spaces and in crowded solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Barrier Crossing Coupled to a Small Set of Oscillators†

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Theory and Simulation of Stochastically-Gated Diffusion-Influenced Reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard‐sphere liquid

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Strategy for rapid immobilization of prey by a fish-hunting marine snail

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Model for the Binding of the Inactivation N−Terminal to the Ion Pore of Shaker Potassium Channel: Both Electrostatic Attraction and Covalent Linkage Are Required for Rapid Inactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Single-Chain versus Dimeric Protein Folding: Thermodynamic and Kinetic Consequences of Covalent Linkage

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

The Affinity-Enhancing Roles of Flexible Linkers in Two-Domain DNA-Binding Proteins†

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Theory of the diffusion-influenced substrate binding rate to a buried and gated active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Effect of interaction potentials in diffusion‐influenced reactions with small reactive regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

The exponential nature of barrier crossings studied by langevin dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Prediction of Protein-Protein Association Rates from a Transition-State Theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

An electrostatic steering mechanism of Cdc42 recognition by Wiskott-Aldrich syndrome proteins

21 January 2018

1 reference

12 December 2020

15N NMR spin relaxation dispersion study of the molecular crowding effects on protein folding under native conditions

1 reference

12 December 2020

Kinetics of carbon monoxide migration and binding in solvated myoglobin as revealed by molecular dynamics simulations and quantum mechanical calculations

1 reference

12 December 2020

Single molecule measurements of repressor protein 1D diffusion on DNA

1 reference

12 December 2020

Rapid, electrostatically assisted association of proteins

1 reference

12 December 2020

Processive Motor Protein as an Overdamped Brownian Stepper

1 reference

12 December 2020

Correlation between rate of enzyme-substrate diffusional encounter and average Boltzmann factor around active site

1 reference

12 December 2020

Dynamics of hard-sphere suspensions

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Atomically detailed simulations of concentrated protein solutions: the effects of salt, pH, point mutations, and protein concentration in simulations of 1000-molecule systems

1 reference

12 December 2020

Disparate ionic-strength dependencies of on and off rates in protein-protein association

1 reference

12 December 2020

Fast protein folding kinetics

1 reference

12 December 2020

Universality in multicomponent glass-forming liquids near the glass transition

1 reference

12 December 2020

Interaction of barnase with its polypeptide inhibitor barstar studied by protein engineering

1 reference

12 December 2020

Diffusion-controlled binding of a peptide neurotoxin to its potassium channel receptor

1 reference

12 December 2020

A kinetic model of coordinated myosin V

1 reference

12 December 2020

Amino acid residues controlling acetylcholinesterase and butyrylcholinesterase specificity

1 reference

12 December 2020

Enhancement of Association Rates by Nonspecific Binding to DNA and Cell Membranes

1 reference

12 December 2020

Zur Theorie der Reaktionsgeschwindigkeiten in Gasen

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

7 January 2021

Statistical mechanics of isomerization dynamics in liquids and the transition state approximation

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

7 January 2021

Coherence resonance in influencer networks

1 reference

https://api.crossref.org/works/10.1017%2FS0033583510000120

7 January 2021

10.1017/S0033583510000120

Identifiers

DOI

1 reference

14 August 2017

1 reference

14 August 2017

1 reference

PMCID

3540998