Nucleosome destabilization in the epigenetic regulation of gene expression (Q37024525)

17 August 2017

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title

Nucleosome destabilization in the epigenetic regulation of gene expression (English)

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17 August 2017

Steven Henikoff

1

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17 August 2017

publication date

1 January 2008

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17 August 2017

published in

Nature Reviews Genetics

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17 August 2017

volume

9

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17 August 2017

issue

1

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17 August 2017

page(s)

15-26

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Controlling the double helix

17 August 2017

cites work

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PCNA connects DNA replication to epigenetic inheritance in yeast.

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MSI1-like proteins: an escort service for chromatin assembly and remodeling complexes

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Polycomb/Trithorax response elements and epigenetic memory of cell identity

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Cellular memory and the histone code

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The role of chromatin during transcription

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A genomic code for nucleosome positioning

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Regulated nucleosome mobility and the histone code.

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Assembly of variant histones into chromatin

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Maintenance of stable heterochromatin domains by dynamic HP1 binding

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Modulation of heterochromatin protein 1 dynamics in primary Mammalian cells

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Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila.

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Polycomb silencing mechanisms and the management of genomic programmes

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The histone methyltransferases Trithorax and Ash1 prevent transcriptional silencing by Polycomb group proteins

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Maintenance of gene expression patterns

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The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth

31 March 2020

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The function and regulation of the JARID1 family of histone H3 lysine 4 demethylases: the Myc connection

31 March 2020

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Polycomb silencers control cell fate, development and cancer

31 March 2020

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Histone chaperone ASF1 cooperates with the Brahma chromatin-remodelling machinery

31 March 2020

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The role of histone H2Av variant replacement and histone H4 acetylation in the establishment of Drosophila heterochromatin

31 March 2020

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Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

31 March 2020

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Nucleosomes unfold completely at a transcriptionally active promoter.

31 March 2020

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Genome-scale profiling of histone H3.3 replacement patterns.

31 March 2020

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Genome-scale identification of nucleosome positions in S. cerevisiae

31 March 2020

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High-resolution profiling of histone methylations in the human genome

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Chromosomal subunits in active genes have an altered conformation

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

31 March 2020

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Dynamics of Replication-Independent Histone Turnover in Budding Yeast

31 March 2020

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Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication

31 March 2020

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Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

31 March 2020

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Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes

31 March 2020

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DNA bending and its relation to nucleosome positioning.

31 March 2020

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New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

31 March 2020

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Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

31 March 2020

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Rules and regulation in the primary structure of chromatin

31 March 2020

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Histone chaperones, a supporting role in the limelight

31 March 2020

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Antagonistic forces that position nucleosomes in vivo.

31 March 2020

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Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

31 March 2020

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Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length

31 March 2020

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HMG-D and histone H1 alter the local accessibility of nucleosomal DNA.

31 March 2020

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NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1.

31 March 2020

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Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4

31 March 2020

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Structural basis for the histone chaperone activity of Asf1

31 March 2020

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Structure of the yeast histone H3-ASF1 interaction: implications for chaperone mechanism, species-specific interactions, and epigenetics

31 March 2020

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

31 March 2020

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Removal of promoter nucleosomes by disassembly rather than sliding in vivo

31 March 2020

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Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis

31 March 2020

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Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication

31 March 2020

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Rtt109 is required for proper H3K56 acetylation: a chromatin mark associated with the elongating RNA polymerase II.

31 March 2020

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Acetylation in histone H3 globular domain regulates gene expression in yeast.

31 March 2020

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ATP-dependent chromatin remodeling

31 March 2020

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Chromatin remodeling by nucleosome disassembly in vitro

31 March 2020

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The Drosophila BRM complex facilitates global transcription by RNA polymerase II

31 March 2020

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Rapid periodic binding and displacement of the glucocorticoid receptor during chromatin remodeling

31 March 2020

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Histone replacement marks the boundaries of cis-regulatory domains

31 March 2020

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The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

31 March 2020

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Distribution of histone H3.3 in hematopoietic cell lineages

31 March 2020

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Molecular dissection of formation of senescence-associated heterochromatin foci

31 March 2020

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Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division

31 March 2020

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Drosophila GAGA factor directs histone H3.3 replacement that prevents the heterochromatin spreading

31 March 2020

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Histone H3.3 is enriched in covalent modifications associated with active chromatin

31 March 2020

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Expression patterns and post-translational modifications associated with mammalian histone H3 variants

31 March 2020

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Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications

31 March 2020

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Transcriptional activation triggers deposition and removal of the histone variant H3.3.

31 March 2020

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Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias

31 March 2020

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Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans

31 March 2020

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Histones are incorporated in trans during reassembly of the yeast PHO5 promoter

31 March 2020

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A model for chromatin based upon two symmetrically paired half-nucleosomes.

31 March 2020

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Split decision: what happens to nucleosomes during DNA replication?

31 March 2020

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Histone variants, nucleosome assembly and epigenetic inheritance

31 March 2020

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On the use of the word 'epigenetic'.

31 March 2020

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Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis

31 March 2020

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The glucocorticoid receptor: rapid exchange with regulatory sites in living cells

31 March 2020

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A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-kappaB-dependent gene activity

31 March 2020

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Genome-wide analysis of Polycomb targets in Drosophila melanogaster

31 March 2020

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Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins

31 March 2020

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Pairing-sensitive silencing, polycomb group response elements, and transposon homing in Drosophila

31 March 2020

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The ABC of the BX-C: the bithorax complex explained

31 March 2020

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CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex

31 March 2020

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Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

31 March 2020

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Dynamics of histone acetylation in vivo. A function for acetylation turnover?

31 March 2020

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Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark

31 March 2020

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Global patterns of histone modifications

31 March 2020

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The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

31 March 2020

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

31 March 2020

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

31 March 2020

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Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF

31 March 2020

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Histone tails and the H3 alphaN helix regulate nucleosome mobility and stability

31 March 2020

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Crystal structure of the nucleosome core particle at 2.8 A resolution

31 March 2020

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The language of covalent histone modifications

31 March 2020

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FACT facilitates transcription-dependent nucleosome alteration

31 March 2020

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Replication-independent core histone dynamics at transcriptionally active loci in vivo

31 March 2020

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Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

31 March 2020

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Transcription through chromatin by RNA polymerase II: histone displacement and exchange

31 March 2020

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Patterning chromatin: form and function for H2A.Z variant nucleosomes

31 March 2020

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Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin

31 March 2020

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Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

31 March 2020

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H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state

31 March 2020

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Transcription-induced chromatin remodeling at the c-myc gene involves the local exchange of histone H2A.Z.

31 March 2020

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A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome

31 March 2020

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H2A.Z alters the nucleosome surface to promote HP1alpha-mediated chromatin fiber folding

31 March 2020

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Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

31 March 2020

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Assembly and disassembly of nucleosome core particles containing histone variants by human nucleosome assembly protein I.

31 March 2020

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Epigenetic gene regulation in the bacterial world

31 March 2020

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Polycomb group protein complexes exchange rapidly in living Drosophila.

31 March 2020

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Polycomb group and trithorax group proteins in Arabidopsis

31 March 2020

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PR-Set7-dependent methylation of histone H4 Lys 20 functions in repression of gene expression and is essential for mitosis

31 March 2020

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Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects

31 March 2020

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Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification.

31 March 2020

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Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro

31 March 2020

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Chaperone-mediated assembly of centromeric chromatin in vitro

31 March 2020

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Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair

31 March 2020

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INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair.

31 March 2020

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ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex

31 March 2020

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Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions

31 March 2020

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Crystal structure of a nucleosome core particle containing the variant histone H2A.Z

31 March 2020

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Spreading of silent chromatin: inaction at a distance

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG2206

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17 August 2017

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