RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals. (Q37197457)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27257063%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

title

RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals (English)

1 reference

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RNA topoisomerase activity

3 April 2020

main subject

1 reference

Gene Ontology release 2020-05-02

8

1 reference

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3 April 2020

Hélène Debat

9

1 reference

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3 April 2020

Marc Nadal

10

1 reference

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3 April 2020

Dongyi Xu

20

1 reference

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3 April 2020

author name string

Muzammil Ahmad

1

1 reference

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3 April 2020

Yutong Xue

2

1 reference

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3 April 2020

Seung Kyu Lee

3

1 reference

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3 April 2020

Jennifer L Martindale

4

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3 April 2020

Weiping Shen

5

1 reference

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3 April 2020

Wen Li

6

1 reference

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3 April 2020

Sige Zou

7

1 reference

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3 April 2020

Fenfei Leng

11

1 reference

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3 April 2020

Hongliang Zhang

12

1 reference

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3 April 2020

Quan Wang

13

1 reference

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3 April 2020

Grace Ee-Lu Siaw

14

1 reference

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3 April 2020

Hengyao Niu

15

1 reference

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3 April 2020

Tao-Shih Hsieh

18

1 reference

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3 April 2020

Yuk-Ching Tse-Dinh

19

1 reference

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3 April 2020

Weidong Wang

21

1 reference

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3 April 2020

Yves Pommier

16

1 reference

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3 April 2020

Myriam Gorospe

17

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3 April 2020

language of work or name

English

0 references

publication date

1 June 2016

1 reference

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3 April 2020

published in

Nucleic Acids Research

1 reference

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3 April 2020

volume

44

1 reference

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3 April 2020

issue

13

1 reference

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3 April 2020

page(s)

6335-6349

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Structural basis for suppression of hypernegative DNA supercoiling by E. coli topoisomerase I

3 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Arginine methylation facilitates the recruitment of TOP3B to chromatin to prevent R loop accumulation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Visualization of the joining of ribosomal subunits reveals the presence of 80S ribosomes in the nucleus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

CRISPR/Cas9-mediated genome engineering and the promise of designer flies on demand

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Synthesis and dissolution of hemicatenanes by type IA DNA topoisomerases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Deletion of TOP3β, a component of FMRP-containing mRNPs, contributes to neurodevelopmental disorders

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Top3β is an RNA topoisomerase that works with fragile X syndrome protein to promote synapse formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

A kinetic clutch governs religation by type IB topoisomerases and determines camptothecin sensitivity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Residues of E. coli topoisomerase I conserved for interaction with a specific cytosine base to facilitate DNA cleavage

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

The strictly conserved Arg-321 residue in the active site of Escherichia coli topoisomerase I plays a critical role in DNA rejoining

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Separate and Combined Biochemical Activities of the Subunits of a Naturally Split Reverse Gyrase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

The DNA relaxation activity and covalent complex accumulation of Mycobacterium tuberculosis topoisomerase I can be assayed in Escherichia coli: application for identification of potential FRET-dye labeling sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Mechanism of the ATP-dependent DNA end-resection machinery from Saccharomyces cerevisiae.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Analysis of RuvABC and RecG involvement in the escherichia coli response to the covalent topoisomerase-DNA complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Analysis of DNA relaxation and cleavage activities of recombinant Mycobacterium tuberculosis DNA topoisomerase I from a new expression and purification protocol

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Tdrd3 is a novel stress granule-associated protein interacting with the Fragile-X syndrome protein FMRP.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

TDRD3, a novel Tudor domain-containing protein, localizes to cytoplasmic stress granules

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Binding and activation of DNA topoisomerase III by the Rmi1 subunit

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Origin and evolution of DNA topoisomerases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Mitochondrial topoisomerases and alternative splicing of the human TOP1mt gene

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Yeast Rmi1/Nce4 controls genome stability as a subunit of the Sgs1-Top3 complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

RMI1/NCE4, a suppressor of genome instability, encodes a member of the RecQ helicase/Topo III complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

BLAP75, an essential component of Bloom's syndrome protein complexes that maintain genome integrity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Interaction network containing conserved and essential protein complexes in Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

DNA topoisomerase III from the hyperthermophilic archaeon Sulfolobus solfataricus with specific DNA cleavage activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

The role of the Zn(II) binding domain in the mechanism of E. coli DNA topoisomerase I

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Cellular roles of dna topoisomerases: a molecular perspective

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Hyperthermophilic topoisomerase I from Thermotoga maritima. A very efficient enzyme that functions independently of zinc binding.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Did DNA replication evolve twice independently?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

A model for the mechanism of human topoisomerase I

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Simple one-week method to construct gene-targeting vectors: application to production of human knockout cell lines

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Asp-to-Asn substitution at the first position of the DxD TOPRIM motif of recombinant bacterial topoisomerase I is extremely lethal to E. coli

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

The reverse gyrase from Pyrobaculum calidifontis, a novel extremely thermophilic DNA topoisomerase endowed with DNA unwinding and annealing activities

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Synergic and opposing activities of thermophilic RecQ-like helicase and topoisomerase 3 proteins in Holliday junction processing and replication fork stabilization.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Dissection of reverse gyrase activities: insight into the evolution of a thermostable molecular machine

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Site-specific ribonuclease activity of eukaryotic DNA topoisomerase I.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Interaction between DNA and an Escherichia coli protein omega

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Variola type IB DNA topoisomerase: DNA binding and supercoil unwinding using engineered DNA minicircles

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Analysis of polysomes from bacteria

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Nucleotide- and stoichiometry-dependent DNA supercoiling by reverse gyrase

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Cloning and characterization of Drosophila topoisomerase IIIbeta. Relaxation of hypernegatively supercoiled DNA.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Crystallization of a 67 kDa fragment of Escherichia coli DNA topoisomerase I.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Modern mRNA proofreading and repair: clues that the last universal common ancestor possessed an RNA genome?

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994864

Probing the structural domains and function in vivo of Escherichia coli DNA topoisomerase I by mutagenesis

20 October 2018

1 reference

12 December 2020

Stimulated activity of human topoisomerases IIalpha and IIbeta on RNA-containing substrates

1 reference

12 December 2020

Polysome profile analysis--yeast

1 reference

12 December 2020

Topoisomerase III can serve as the cellular decatenase in Escherichia coli

1 reference

12 December 2020

The role of single-strand breaks in the catenation reaction catalyzed by the rat type I topoisomerase

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKW508

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27257063%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27257063%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

PubMed publication ID

27257063

1 reference