The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis. (Q37281847)

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23 March 2020

title

The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis (English)

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23 March 2020

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4

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23 March 2020

Robin P Love

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23 March 2020

Yuqing Feng

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Linda Chelico

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Michael Carpenter

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Reuben S Harris

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3

Jennifer L McCann

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23 March 2020

author name string

Gabriel J Starrett

1

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23 March 2020

Elizabeth M Luengas

2

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23 March 2020

Nuri A Temiz

5

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Madison B Adolph

8

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23 March 2020

Emily K Law

10

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language of work or name

English

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publication date

21 September 2016

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23 March 2020

published in

Nature Communications

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volume

7

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23 March 2020

page(s)

12918

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Creative Commons Attribution 4.0 International

23 March 2020

copyright license

start time

21 September 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageQuant

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11 June 2022

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based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms12918

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cites work

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Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine

6 September 2017

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6 September 2017

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APOBEC Enzymes: Mutagenic Fuel for Cancer Evolution and Heterogeneity

6 September 2017

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6 September 2017

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APOBEC family mutational signatures are associated with poor prognosis translocations in multiple myeloma

6 September 2017

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6 September 2017

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Molecular mechanism and clinical impact of APOBEC3B-catalyzed mutagenesis in breast cancer

6 September 2017

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6 September 2017

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APOBEC3B expression in breast cancer reflects cellular proliferation, while a deletion polymorphism is associated with immune activation

6 September 2017

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Biological and therapeutic impact of intratumor heterogeneity in cancer evolution

6 September 2017

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Hypermutation in human cancer genomes: footprints and mechanisms

6 September 2017

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6 September 2017

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Natural polymorphisms in human APOBEC3H and HIV-1 Vif combine in primary T lymphocytes to affect viral G-to-A mutation levels and infectivity

6 September 2017

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6 September 2017

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A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage

6 September 2017

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Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers

6 September 2017

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6 September 2017

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Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer

6 September 2017

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6 September 2017

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APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

6 September 2017

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6 September 2017

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The choice of nucleotide inserted opposite abasic sites formed within chromosomal DNA reveals the polymerase activities participating in translesion DNA synthesis

6 September 2017

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Signatures of mutational processes in human cancer

6 September 2017

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The local dinucleotide preference of APOBEC3G can be altered from 5'-CC to 5'-TC by a single amino acid substitution.

6 September 2017

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An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

6 September 2017

1 reference

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Evidence for APOBEC3B mutagenesis in multiple human cancers

6 September 2017

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Mutational heterogeneity in cancer and the search for new cancer-associated genes

6 September 2017

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Endogenous APOBEC3A DNA cytosine deaminase is cytoplasmic and nongenotoxic.

6 September 2017

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APOBEC3B is an enzymatic source of mutation in breast cancer.

6 September 2017

1 reference

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Subcellular localization of the APOBEC3 proteins during mitosis and implications for genomic DNA deamination.

6 September 2017

1 reference

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Translesion DNA polymerases and cancer

6 September 2017

1 reference

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Methylcytosine and normal cytosine deamination by the foreign DNA restriction enzyme APOBEC3A

6 September 2017

1 reference

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Reduced APOBEC3H variant anti-viral activities are associated with altered RNA binding activities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Mutational processes molding the genomes of 21 breast cancers

6 September 2017

1 reference

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Strikingly different properties of uracil-DNA glycosylases UNG2 and SMUG1 may explain divergent roles in processing of genomic uracil

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3A, APOBEC3B, and APOBEC3H haplotype 2 restrict human T-lymphotropic virus type 1

6 September 2017

1 reference

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APOBEC3B and AID have similar nuclear import mechanisms

6 September 2017

1 reference

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The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites

6 September 2017

1 reference

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Target cell-mediated editing of HIV-1 cDNA by APOBEC3 proteins in human macrophages.

6 September 2017

1 reference

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Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3A can activate the DNA damage response and cause cell-cycle arrest

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Local sequence targeting in the AID/APOBEC family differentially impacts retroviral restriction and antibody diversification.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Innate immune signaling induces high levels of TC-specific deaminase activity in primary monocyte-derived cells through expression of APOBEC3A isoforms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

The localization of APOBEC3H variants in HIV-1 virions determines their antiviral activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Lentiviral Vif degrades the APOBEC3Z3/APOBEC3H protein of its mammalian host and is capable of cross-species activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3 proteins mediate the clearance of foreign DNA from human cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

The Sequence Alignment/Map format and SAMtools

6 September 2017

1 reference

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Papillomaviruses in the causation of human cancers - a brief historical account

6 September 2017

1 reference

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Antiretroelement activity of APOBEC3H was lost twice in recent human evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

The AID/APOBEC family of nucleic acid mutators.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Population stratification of a common APOBEC gene deletion polymorphism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Cellular inhibitors of long interspersed element 1 and Alu retrotransposition.

6 September 2017

1 reference

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Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

DNA deamination mediates innate immunity to retroviral infection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Increased APOBEC3B Predicts Worse Outcomes in Lung Cancer: A Comprehensive Retrospective Study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3G Expression Correlates with T-Cell Infiltration and Improved Clinical Outcomes in High-grade Serous Ovarian Carcinoma

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3G DNA deaminase acts processively 3' --> 5' on single-stranded DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Consensus sequences for good and poor removal of uracil from double stranded DNA by uracil-DNA glycosylase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3B high expression status is associated with aggressive phenotype in Japanese breast cancers

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

High APOBEC3B expression is a predictor of recurrence in patients with low-risk clear cell renal cell carcinoma

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

Polymorphism in human APOBEC3H affects a phenotype dominant for subcellular localization and antiviral activity

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

DNA cytosine methylation and heat-induced deamination

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

APOBEC3B mutagenesis in cancer

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5036005

3 September 2018

Identifiers

DOI

10.1038/NCOMMS12918

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27650891%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27650891%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference