DNA substrate preparation for atomic force microscopy studies of protein-DNA interactions (Q38166320)

30 August 2017

title

DNA substrate preparation for atomic force microscopy studies of protein-DNA interactions (English)

1 reference

30 August 2017

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24277605%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Claudia N Buechner

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24277605%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

publication date

1 December 2013

1 reference

Journal of Molecular Recognition

30 August 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24277605%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24277605%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24277605%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

605-617

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24277605%20AND%20SRC:MED&resulttype=core&format=json

A high-speed atomic force microscope for studying biological macromolecules.

9 June 2020

cites work

1 reference

High-speed atomic force microscopy for observing dynamic biomolecular processes

21 January 2018

1 reference

Functional oligomeric state of avian sarcoma virus integrase

21 January 2018

1 reference

The great GATC: DNA methylation in E. coli

21 January 2018

1 reference

Single-molecule studies of DNA transcription using atomic force microscopy

21 January 2018

1 reference

Single-stranded loops as end-label polarity markers for double-stranded linear DNA templates in atomic force microscopy

21 January 2018

1 reference

DNA structural transitions within the PKD1 gene.

21 January 2018

1 reference

Activation-induced deaminase, AID, is catalytically active as a monomer on single-stranded DNA.

21 January 2018

1 reference

Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

21 January 2018

1 reference

Circular DNA molecules imaged in air by scanning force microscopy

21 January 2018

1 reference

Direct visualization of a DNA glycosylase searching for damage

21 January 2018

1 reference

Evaluation of techniques for generation of single-stranded DNA for quantitative detection.

21 January 2018

1 reference

Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy

21 January 2018

1 reference

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

21 January 2018

1 reference

New insight into the recognition of branched DNA structure by junction-resolving enzymes

21 January 2018

1 reference

Regulation of DNA methylation using different tensions of double strands constructed in a defined DNA nanostructure

21 January 2018

1 reference

DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity

21 January 2018

1 reference

A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication

21 January 2018

1 reference

Surface-directed DNA condensation in the absence of soluble multivalent cations

21 January 2018

1 reference

High accuracy FIONA-AFM hybrid imaging.

21 January 2018

1 reference

AFM volumetric methods for the characterization of proteins and nucleic acids

21 January 2018

1 reference

In vitro studies of DNA mismatch repair proteins

21 January 2018

1 reference

Distribution of DNA fragment sizes after irradiation with ions

21 January 2018

1 reference

High affinity cooperative DNA binding by the yeast Mlh1-Pms1 heterodimer

21 January 2018

1 reference

Surface biology of DNA by atomic force microscopy

21 January 2018

1 reference

Genome maintenance mechanisms for preventing cancer

21 January 2018

1 reference

Comparative assessment of plasmid and oligonucleotide DNA substrates in measurement of in vitro base excision repair activity.

21 January 2018

1 reference

The molecular machines of DNA repair: scanning force microscopy analysis of their architecture

21 January 2018

1 reference

Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases

21 January 2018

1 reference

Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair.

21 January 2018

1 reference

Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis.

21 January 2018

1 reference

The role of DNA methylation in aging, rejuvenation, and age-related disease

21 January 2018

1 reference

Identification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii

21 January 2018

1 reference

Interactions of human replication protein A with single-stranded DNA adducts

21 January 2018

1 reference

Imaging DNA molecules on mica surface by atomic force microscopy in air and in liquid

21 January 2018

1 reference

Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy

21 January 2018

1 reference

Efficient preparation of internally modified single-molecule constructs using nicking enzymes

21 January 2018

1 reference

Nicking enzyme–based internal labeling of DNA at multiple loci

21 January 2018

1 reference

DNA structure and dynamics: an atomic force microscopy study

21 January 2018

1 reference

Preparation of DNA and nucleoprotein samples for AFM imaging

21 January 2018

1 reference

AFM for analysis of structure and dynamics of DNA and protein-DNA complexes

21 January 2018

1 reference

DNA methylation in Escherichia coli

21 January 2018

1 reference

H-DNA and related structures.

21 January 2018

1 reference

Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

21 January 2018

1 reference

Stepwise translocation of nucleic acid motors.

21 January 2018

1 reference

Direct visualization of dynamic protein-DNA interactions with a dedicated atomic force microscope

21 January 2018

1 reference

DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development

21 January 2018

1 reference

A unified theory of gene expression

21 January 2018

1 reference

The dam and dcm strains of Escherichia coli--a review

21 January 2018

1 reference

Adsorption of DNA to mica mediated by divalent counterions: a theoretical and experimental study.

21 January 2018

1 reference

Specific DNA-protein interactions on mica investigated by atomic force microscopy.

21 January 2018

1 reference

Translocation and unwinding mechanisms of RNA and DNA helicases

21 January 2018

1 reference

The chemistry and biology of left-handed Z-DNA.

21 January 2018

1 reference

Rad52 and Ku bind to different DNA structures produced early in double-strand break repair

21 January 2018

1 reference

XPB helicase regulates DNA incision by the Thermoplasma acidophilum endonuclease Bax1.

21 January 2018

1 reference

Dynamic structures of Bacillus subtilis RecN-DNA complexes

21 January 2018

1 reference

Atomic force microscopy identification of transcription factor NFkappaB bound to streptavidin-pin-holding DNA probe

21 January 2018

1 reference

Electron microscopic study of (A)BC excinuclease. DNA is sharply bent in the UvrB-DNA complex

21 January 2018

1 reference

Atomic force microscopy imaging of DNA covalently immobilized on a functionalized mica substrate

21 January 2018

1 reference

Structure and dynamics of three-way DNA junctions: atomic force microscopy studies

21 January 2018

1 reference

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

21 January 2018

1 reference

Atomic force microscopy studies provide direct evidence for dimerization of the HIV restriction factor APOBEC3G

21 January 2018

1 reference

Nanoscale structure and dynamics of ABOBEC3G complexes with single-stranded DNA.

21 January 2018

1 reference

Specificity of binding of single-stranded DNA-binding protein to its target

21 January 2018

1 reference

Mica functionalization for imaging of DNA and protein-DNA complexes with atomic force microscopy

21 January 2018

1 reference

Characterization of the ATPase activity of the Escherichia coli RecG protein reveals that the preferred cofactor is negatively supercoiled DNA.

21 January 2018

1 reference

A multistep damage recognition mechanism for global genomic nucleotide excision repair

21 January 2018

1 reference

Two-step recognition of DNA damage for mammalian nucleotide excision repair: Directional binding of the XPC complex and DNA strand scanning

21 January 2018

1 reference

AFM studies on the role of the protein RdgC in bacterial DNA recombination.

21 January 2018

1 reference

Mechanism of MutS searching for DNA mismatches and signaling repair

21 January 2018

1 reference

Cooperative cluster formation, DNA bending and base-flipping by O6-alkylguanine-DNA alkyltransferase

21 January 2018

1 reference

Architecture of nucleotide excision repair complexes: DNA is wrapped by UvrB before and after damage recognition

21 January 2018

1 reference

The presence of two UvrB subunits in the UvrAB complex ensures damage detection in both DNA strands

21 January 2018

1 reference

Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer

21 January 2018

1 reference

Preparation of DNA substrates for in vitro mismatch repair

21 January 2018

1 reference

Simple and rapid preparation of gapped plasmid DNA for incorporation of oligomers containing specific DNA lesions

21 January 2018

1 reference

DNA bending and unbending by MutS govern mismatch recognition and specificity

21 January 2018

1 reference

Solution AFM studies of human Swi-Snf and its interactions with MMTV DNA and chromatin

21 January 2018

1 reference

Double-stranded DNA homology produces a physical signature

21 January 2018

1 reference

Biochemical topology: applications to DNA recombination and replication

21 January 2018

1 reference

Correcting for AFM tip induced topography convolutions in protein-DNA samples

21 January 2018

1 reference

The DNA binding preference of RAD52 and RAD59 proteins: implications for RAD52 and RAD59 protein function in homologous recombination.

21 January 2018

1 reference

Structure and mechanism for DNA lesion recognition

21 January 2018

1 reference

Quantitative characterization of biomolecular assemblies and interactions using atomic force microscopy

21 January 2018

1 reference

Determination of protein-DNA binding constants and specificities from statistical analyses of single molecules: MutS-DNA interactions

21 January 2018

1 reference

Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL.

21 January 2018

1 reference

Visualization of cellular DNA crosslinks by atomic force microscopy

21 January 2018

1 reference

Formation of DNA repair intermediates and incision by the ATP-dependent UvrB-UvrC endonuclease.

21 January 2018

1 reference