Current status and recent advances of next generation sequencing techniques in immunological repertoire (Q38768307)

6 September 2017

title

Current status and recent advances of next generation sequencing techniques in immunological repertoire (English)

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6 September 2017

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X-L Hou

1

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6 September 2017

L Wang

2

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6 September 2017

Y-L Ding

3

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6 September 2017

Q Xie

4

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6 September 2017

H-Y Diao

5

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6 September 2017

language of work or name

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10 March 2016

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6 September 2017

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6 September 2017

volume

17

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6 September 2017

issue

3

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6 September 2017

page(s)

153-164

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Somatic generation of antibody diversity

6 September 2017

cites work

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The many important facets of T-cell repertoire diversity

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A direct estimate of the human alphabeta T cell receptor diversity

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Genetics is a major determinant of expression of the human hepatic uptake transporter OATP1B1, but not of OATP1B3 and OATP2B1

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High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire.

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High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets

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Methods for comparing the diversity of samples of the T cell receptor repertoire

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Diversity of epitope and cytokine profiles for primary and secondary influenza a virus-specific CD8+ T cell responses

21 January 2018

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Cytotoxic T lymphocytes directed against a tumor-specific mutated antigen display similar HLA tetramer binding but distinct functional avidity and tissue distribution.

21 January 2018

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A transgenic mouse model to analyze CD8(+) effector T cell differentiation in vivo

21 January 2018

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Diversity in the CDR3 region of V(H) is sufficient for most antibody specificities

21 January 2018

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Development of the expressed Ig CDR-H3 repertoire is marked by focusing of constraints in length, amino acid use, and charge that are first established in early B cell progenitors

21 January 2018

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Predominant autoantibody production by early human B cell precursors

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Molecular structure of eight human autoreactive monoclonal antibodies

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Analysis of the structural correlates for antibody polyreactivity by multiple reassortments of chimeric human immunoglobulin heavy and light chain V segments

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Shaping of human germline IgH repertoires revealed by deep sequencing

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A Molecular Marker for Thymocyte-Positive Selection: Selection of CD4 Single-Positive Thymocytes with Shorter TCRB CDR3 During T Cell Development

21 January 2018

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BCR CDR3 length distributions differ between blood and spleen and between old and young patients, and TCR distributions can be used to detect myelodysplastic syndrome.

21 January 2018

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Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

21 January 2018

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Overlap and Effective Size of the Human CD8 + T Cell Receptor Repertoire

21 January 2018

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Next-generation antibody discovery platforms.

21 January 2018

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High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations

21 January 2018

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T-cell repertoires in healthy and diseased human tissues analysed by T-cell receptor beta-chain CDR3 size determination: evidence for oligoclonal expansions in tumours and inflammatory diseases

21 January 2018

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Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

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Gene segment selection in V(D)J recombination: accessibility and beyond

21 January 2018

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Public and private V beta T cell receptor repertoires against hen egg white lysozyme (HEL) in nontransgenic versus HEL transgenic mice

21 January 2018

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Selection of T cell clones expressing high-affinity public TCRs within Human cytomegalovirus-specific CD8 T cell responses

21 January 2018

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Rhabdovirus infection induces public and private T cell responses in teleost fish

21 January 2018

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T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity

21 January 2018

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Human T-cell memory consists mainly of unexpanded clones.

21 January 2018

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Thymus-derived regulatory T cells contribute to tolerance to commensal microbiota

21 January 2018

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21 January 2018

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21 January 2018

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The influence of age on T cell generation and TCR diversity

21 January 2018

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21 January 2018

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Age-associated decline in T cell repertoire diversity leads to holes in the repertoire and impaired immunity to influenza virus

21 January 2018

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B-cell responses to vaccination at the extremes of age.

21 January 2018

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T cell aging: naive but not young

21 January 2018

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Strategies to enhance T-cell reconstitution in immunocompromised patients

21 January 2018

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Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

21 January 2018

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Performance comparison of benchtop high-throughput sequencing platforms

21 January 2018

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Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing

21 January 2018

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Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing

21 January 2018

1 reference

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A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape.

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

Nonsense codons trigger an RNA partitioning shift

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes.

21 January 2018

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21 January 2018

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Amplification of cDNA ends based on template-switching effect and step-out PCR.

21 January 2018

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Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

21 January 2018

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Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FGENE.2016.9

Profiling model T-cell metagenomes with short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FGENE.2016.9

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India

21 January 2018

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Pairing of T-cell receptor chains via emulsion PCR.

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

Uniform double-walled polymer microspheres of controllable shell thickness.

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

Inflamed target tissue provides a specific niche for highly expanded T-cell clones in early human autoimmune disease

21 January 2018

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https://api.crossref.org/works/10.1038%2FGENE.2016.9

High-throughput T-cell receptor sequencing across chronic liver diseases reveals distinct disease-associated repertoires.

21 January 2018

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12 December 2020

Dynamics and requirements of T cell clonal expansion in vivo at the single-cell level: effector function is linked to proliferative capacity.

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12 December 2020

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

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12 December 2020

Non-productive human TCR beta chain genes represent V-D-J diversity before selection upon function: insight into biased usage of TCRBD and TCRBJ genes and diversity of CDR3 region length

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12 December 2020

A quality control pathway that down-regulates aberrant T-cell receptor (TCR) transcripts by a mechanism requiring UPF2 and translation

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12 December 2020

Individual variations in the murine T cell response to a specific peptide reflect variability in naive repertoires

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12 December 2020

Functional avidity maturation of CD8(+) T cells without selection of higher affinity TCR

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12 December 2020

IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling

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12 December 2020

Diversity of human alpha beta T cell receptors

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12 December 2020

Immune-mediated bone marrow failure syndromes of progenitor and stem cells: molecular analysis of cytotoxic T cell clones.

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12 December 2020

Effector differentiation is not prerequisite for generation of memory cytotoxic T lymphocytes

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12 December 2020

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

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12 December 2020

Sequence analysis of T-cell repertoires in health and disease.

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12 December 2020

High-throughput pairing of T cell receptor α and β sequences

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12 December 2020

Fine specificity of monoclonal antibodies directed at human T cell receptor variable regions: comparison with oligonucleotide-driven amplification for evaluation of V beta expression

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12 December 2020

Identifiers

DOI

10.1038/GENE.2016.9

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Dimensions Publication ID

6 September 2017

1005975614

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