MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation (Q39952310)

15 September 2017

MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation (English)

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15 September 2017

4

Douwe van Sinderen

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15 September 2017

Gabriele Andrea Lugli

1

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15 September 2017

Christian Milani

2

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15 September 2017

Leonardo Mancabelli

3

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15 September 2017

Marco Ventura

5

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15 September 2017

language of work or name

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1 March 2016

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FEMS Microbiology Letters

15 September 2017

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15 September 2017

363

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15 September 2017

7

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Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

15 September 2017

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

The RAST Server: rapid annotations using subsystems technology

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

xBASE2: a comprehensive resource for comparative bacterial genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Dynamics of genome rearrangement in bacterial populations

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Pfam: the protein families database

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

QUAST: quality assessment tool for genome assemblies

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Prodigal: prokaryotic gene recognition and translation initiation site identification

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Solving the Problem: Genome Annotation Standards before the Data Deluge

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

The Sequence Alignment/Map format and SAMtools

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Comparison of next-generation sequencing systems

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

IMG 4 version of the integrated microbial genomes comparative analysis system

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Genomic encyclopedia of type strains of the genus Bifidobacterium

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Aggressive assembly of pyrosequencing reads with mates

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Sequencing technologies and genome sequencing

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

BG7: a new approach for bacterial genome annotation designed for next generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Artemis: sequence visualization and annotation

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Prokka: rapid prokaryotic genome annotation

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

ABySS: a parallel assembler for short read sequence data

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

RefSeq microbial genomes database: new representation and annotation strategy

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Human gut microbiota and bifidobacteria: from composition to functionality

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Analysis of bifidobacterial evolution using a multilocus approach

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

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https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FFEMSLE%2FFNW049

21 January 2018

Identifiers

DOI

10.1093/FEMSLE/FNW049

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15 September 2017

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