MetaQUAST: evaluation of metagenome assemblies (Q40267042)

19 September 2017

MetaQUAST: evaluation of metagenome assemblies (English)

1 reference

19 September 2017

Alla Mikheenko

1

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Alexey A. Gurevich

object named as

Alexey Gurevich

series ordinal

3

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author name string

Vladislav Saveliev

series ordinal

2

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PubMed ID

26614127

19 September 2017

language of work or name

English

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publication date

26 November 2015

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19 September 2017

3

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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19 September 2017

32

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19 September 2017

1088-1090

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19 September 2017

7

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Basic local alignment search tool

19 September 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Ray Meta: scalable de novo metagenome assembly and profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

BLAST+: architecture and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

De novo likelihood-based measures for comparing genome assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

QUAST: quality assessment tool for genome assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Omega: an overlap-graph de novo assembler for metagenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Structure, function and diversity of the healthy human microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

LUMPY: a probabilistic framework for structural variant discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Interactive metagenomic visualization in a Web browser

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Time-course network analysis reveals TNF-α can promote G1/S transition of cell cycle in vascular endothelial cells

21 January 2018

1 reference

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A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

21 January 2018

1 reference

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Metagenomic exploration of viruses throughout the Indian Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Kraken: ultrafast metagenomic sequence classification using exact alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

Ab initio gene identification in metagenomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV697

10.1093/BIOINFORMATICS/BTV697

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/MikheenkoSG16

19 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

26614127