Role of free DNA ends and protospacer adjacent motifs for CRISPR DNA uptake in Pyrococcus furiosus (Q47894799)

6 February 2018

title

Role of free DNA ends and protospacer adjacent motifs for CRISPR DNA uptake in Pyrococcus furiosus (English)

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6 February 2018

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Pyrococcus furiosus

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6

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6 February 2018

author name string

Masami Shiimori

1

1 reference

6 February 2018

Sandra C Garrett

2

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6 February 2018

Dwain P Chambers

3

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6 February 2018

Claiborne V C Glover

4

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6 February 2018

Brenton R Graveley

5

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6 February 2018

language of work or name

English

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publication date

25 September 2017

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6 February 2018

published in

Nucleic Acids Research

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6 February 2018

volume

45

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6 February 2018

issue

19

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6 February 2018

page(s)

11281-11294

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6 February 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

25 September 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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22 May 2018

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Cas1–Cas2 complex formation mediates spacer acquisition during CRISPR–Cas adaptive immunity

22 May 2018

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22 May 2018

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Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands

22 May 2018

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Protospacer recognition motifs: mixed identities and functional diversity

22 May 2018

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The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity

22 May 2018

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Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information

22 May 2018

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Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system

22 May 2018

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Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome

22 May 2018

1 reference

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CRISPR interference directs strand specific spacer acquisition

22 May 2018

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Recombinogenic properties of Pyrococcus furiosus strain COM1 enable rapid selection of targeted mutants.

22 May 2018

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R loops: from transcription byproducts to threats to genome stability

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

22 May 2018

1 reference

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Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

22 May 2018

1 reference

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High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Defining components of the chromosomal origin of replication of the hyperthermophilic archaeon Pyrococcus furiosus needed for construction of a stable replicating shuttle vector.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Parallel evolution of transcriptome architecture during genome reorganization

22 May 2018

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22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Self-targeting by CRISPR: gene regulation or autoimmunity?

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Shuttle vector-based transformation system for Pyrococcus furiosus

22 May 2018

1 reference

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22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

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22 May 2018

1 reference

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Insertion sequence diversity in archaea

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

WebLogo: A Sequence Logo Generator

22 May 2018

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22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Molecular model for the transposition and replication of bacteriophage Mu and other transposable elements

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Spacer capture and integration by a type I-F Cas1-Cas2-3 CRISPR adaptation complex.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737086

Regulation of ribosomal RNA transcription by growth rate of the hyperthermophilic Archaeon, Pyrococcus furiosus.

14 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29036456

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKX839

1 reference

6 February 2018

PMC publication ID

5737086

1 reference

6 February 2018

PubMed publication ID

29036456

1 reference

6 February 2018