XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data (Q57024703)

14

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Daniel Peeper

16

object named as

Daniel S Peeper

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author name string

Roelof J C Kluin

1

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Kristel Kemper

2

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Thomas Kuilman

3

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Julian R de Ruiter

4

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Vivek Iyer

5

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Josep V Forment

6

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Paulien Cornelissen-Steijger

7

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Iris de Rink

8

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Petra Ter Brugge

9

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Ji-Ying Song

10

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Sjoerd Klarenbeek

11

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Jos Jonkers

13

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David J Adams

15

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Oscar Krijgsman

Creative Commons Attribution 4.0 International

17

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language of work or name

English

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publication date

4 October 2018

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published in

BMC Bioinformatics

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volume

19

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issue

1

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page(s)

366

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copyright license

start time

4 October 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-018-2353-5

0 references

cites work

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Interrogating open issues in cancer precision medicine with patient-derived xenografts.

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Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

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A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds

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Mechanisms of Therapy Resistance in Patient-Derived Xenograft Models of BRCA1-Deficient Breast Cancer

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BRAF(V600E) Kinase Domain Duplication Identified in Therapy-Refractory Melanoma Patient-Derived Xenografts

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High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response.

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The genomic landscape of response to EGFR blockade in colorectal cancer.

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Progesterone receptor modulates ERα action in breast cancer

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The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes

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Intra- and inter-tumor heterogeneity in a vemurafenib-resistant melanoma patient and derived xenografts

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Stromal contribution to the colorectal cancer transcriptome.

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Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?

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Setting up a wide panel of patient-derived tumor xenografts of non-small cell lung cancer by improving the preanalytical steps

30 November 2018

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COSMIC: exploring the world's knowledge of somatic mutations in human cancer

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Melanoma patient-derived xenografts accurately model the disease and develop fast enough to guide treatment decisions.

30 November 2018

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Patient-derived xenograft models: an emerging platform for translational cancer research

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A molecularly annotated platform of patient-derived xenografts ("xenopatients") identifies HER2 as an effective therapeutic target in cetuximab-resistant colorectal cancer

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Tumor grafts derived from women with breast cancer authentically reflect tumor pathology, growth, metastasis and disease outcomes

30 November 2018

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Mouse genomic variation and its effect on phenotypes and gene regulation

30 November 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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An in vivo platform for translational drug development in pancreatic cancer

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