Trans-translation exposed: understanding the structures and functions of tmRNA-SmpB (Q27021295)

Kevin Macé

series ordinal

2

1 reference

Reynald Gillet

series ordinal

3

1 reference

language of work or name

1 reference

2014

1 reference

Frontiers in Microbiology

published in

1 reference

volume

5

1 reference

page(s)

113

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The tmRNA ribosome-rescue system

cites work

1 reference

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Pyrazinamide inhibits trans-translation in Mycobacterium tuberculosis

21 March 2017

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Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA

21 March 2017

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Transfer-messenger RNA unfolds as it transits the ribosome

21 March 2017

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A third lineage with two-piece tmRNA

21 March 2017

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21 March 2017

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tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter

21 March 2017

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3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

21 March 2017

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A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli

21 March 2017

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The complex of tmRNA-SmpB and EF-G on translocating ribosomes

21 March 2017

1 reference

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Structural Basis for the Rescue of Stalled Ribosomes: Structure of YaeJ Bound to the Ribosome

21 March 2017

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Decoding in the Absence of a Codon by tmRNA and SmpB in the Ribosome

21 March 2017

1 reference

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tmRNA-SmpB: a journey to the centre of the bacterial ribosome

21 March 2017

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Visualizing the transfer-messenger RNA as the ribosome resumes translation

21 March 2017

1 reference

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The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

21 March 2017

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Scaffolding as an Organizing Principle in Trans-translation: THE ROLES OF SMALL PROTEIN B AND RIBOSOMAL PROTEIN S1

21 March 2017

1 reference

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Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Visualizing tmRNA entry into a stalled ribosome

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Selection of tRNA by the ribosome requires a transition from an open to a closed form

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Ribosomes regulate the stability and action of the exoribonuclease RNase R.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The task force that rescues stalled ribosomes in bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Small molecule inhibitors of trans-translation have broad-spectrum antibiotic activity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Synergies between RNA degradation and trans-translation in Streptococcus pneumoniae: cross regulation and co-transcription of RNase R and SmpB.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Transfer-messenger RNA-SmpB protein regulates ribonuclease R turnover by promoting binding of HslUV and Lon proteases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The busiest of all ribosomal assistants: elongation factor Tu.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Multiple activities of RNA-binding proteins S1 and Hfq.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The role of SmpB and the ribosomal decoding center in licensing tmRNA entry into stalled ribosomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

SmpB as the handyman of tmRNA during trans-translation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Role of the C-terminal tail of SmpB in the early stage of trans-translation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

rRNA mutations that inhibit transfer-messenger RNA activity on stalled ribosomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

SmpB contributes to reading frame selection in the translation of transfer-messenger RNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Escherichia coli tmRNA lacking pseudoknot 1 tags truncated proteins in vivo and in vitro

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The role of upstream sequences in selecting the reading frame on tmRNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The tmRNA system for translational surveillance and ribosome rescue.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

tmRNA and associated ligands: a puzzling relationship.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

tmRNA from Thermus thermophilus. Interaction with alanyl-tRNA synthetase and elongation factor Tu.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Ribosomal protein S1 induces a conformational change of tmRNA; more than one protein S1 per molecule of tmRNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Two-piece tmRNA in cyanobacteria and its structural analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Complex of transfer-messenger RNA and elongation factor Tu. Unexpected modes of interaction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Structure and functions of ribosomal protein S1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Location of a gene (ssrA) for a small, stable RNA (10Sa RNA) in the Escherichia coli chromosome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Characterization of 10S RNA: A new stable RNA molecule from Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

An unusual mechanism for EF-Tu activation during tmRNA-mediated ribosome rescue

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

RNA-methyltransferase TrmA is a dual-specific enzyme responsible for C5-methylation of uridine in both tmRNA and tRNA.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Non-stop mRNA decay initiates at the ribosome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

tmRNA.SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Structural features of the tmRNA-ribosome interaction

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Ribosome hijacking: a role for small protein B during trans-translation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Determinants on tmRNA for initiating efficient and precise trans-translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Resuming translation on tmRNA: a unique mode of determining a reading frame

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3968760

Functional evidence for D- and T-loop interactions in tmRNA.

31 May 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

Interaction of SmpB with ribosome from directed hydroxyl radical probing

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

Stepping Transfer Messenger RNA through the Ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

A simple structural feature is a major determinant of the identity of a transfer RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00113

SmpB triggers GTP hydrolysis of elongation factor Tu on ribosomes by compensating for the lack of codon-anticodon interaction during trans-translation initiation

21 January 2018

1 reference

12 December 2020

Swapping the domains of exoribonucleases RNase II and RNase R: Conferring upon RNase II the ability to degrade ds RNA

1 reference

12 December 2020

Structural studies of the tRNA domain of tmRNA

1 reference

12 December 2020

Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs

1 reference

12 December 2020

Identifiers

DOI

10.3389/FMICB.2014.00113

1 reference

1 reference

1 reference

PubMed publication ID

24711807

1 reference