Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest. (Q30373871)

12 October 2017

Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest. (English)

1 reference

12 October 2017

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1

Juyong Lee

1 reference

12 October 2017

Kiho Lee

2

1 reference

12 October 2017

InSuk Joung

3

1 reference

12 October 2017

Keehyoung Joo

4

1 reference

12 October 2017

Bernard R Brooks

5

1 reference

12 October 2017

Jooyoung Lee

6

1 reference

12 October 2017

21 March 2015

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12 October 2017

1 reference

12 October 2017

16

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12 October 2017

94

1 reference

Creative Commons Attribution 2.0 Generic

12 October 2017

start time

21 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Critical assessment of methods of protein structure prediction (CASP)--round x

20 June 2018

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Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

20 June 2018

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lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

20 June 2018

1 reference

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Protein structure modeling for CASP10 by multiple layers of global optimization.

20 June 2018

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Improved network community structure improves function prediction

20 June 2018

1 reference

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Hidden information revealed by optimal community structure from a protein-complex bipartite network improves protein function prediction

20 June 2018

1 reference

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Assessment of template based protein structure predictions in CASP9.

20 June 2018

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RaptorX: exploiting structure information for protein alignment by statistical inference

20 June 2018

1 reference

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Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Incorporation of evolutionary information into Rosetta comparative modeling

20 June 2018

1 reference

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I-TASSER: fully automated protein structure prediction in CASP8

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

20 June 2018

1 reference

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Evaluation of template-based models in CASP8 with standard measures

20 June 2018

1 reference

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Template-based and free modeling by RAPTOR++ in CASP8

20 June 2018

1 reference

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Fast and accurate automatic structure prediction with HHpred.

20 June 2018

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Multiple sequence alignment by conformational space annealing

20 June 2018

1 reference

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MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Assessment of CASP7 predictions for template-based modeling targets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

High accuracy template based modeling by global optimization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

20 June 2018

1 reference

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Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Protein homology detection by HMM-HMM comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Scoring function for automated assessment of protein structure template quality

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Modeller: generation and refinement of homology-based protein structure models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

PISCES: a protein sequence culling server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Modeling of loops in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Protein structure prediction by global optimization of a potential energy function.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Topological mirror images in protein structure computation: an underestimated problem.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

CASP9 results compared to those of previous CASP experiments

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0526-Z

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-015-0526-Z

Sann: solvent accessibility prediction of proteins by nearest neighbor method

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

Prediction of protein secondary structure at 80% accuracy.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4374281

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25886990

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Boosting Protein Threading Accuracy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25886990

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-015-0526-Z

1 reference

journals/bmcbi/LeeLJJBL15

12 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

12 October 2017

PubMed publication ID

25886990

1 reference