Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells (Q33742524)

29 July 2017

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells (English)

1 reference

genome-wide association study

29 July 2017

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author

Andrea Pagnani

5

1 reference

29 July 2017

Francesco Neri

1

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Salvatore Oliviero

object named as

Salvatore Oliviero

8

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Riccardo Zecchina

object named as

Riccardo Zecchina

6

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author name string

Danny Incarnato

2

1 reference

29 July 2017

Anna Krepelova

3

1 reference

29 July 2017

Stefania Rapelli

4

1 reference

29 July 2017

Caterina Parlato

7

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29 July 2017

29 August 2013

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29 July 2017

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29 July 2017

14

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29 July 2017

R91

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29 July 2017

8

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2013-14-8-r91

29 July 2017

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cites work

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Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity

21 June 2018

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Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

21 June 2018

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Myc regulates the transcription of the PRC2 gene to control the expression of developmental genes in embryonic stem cells

21 June 2018

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Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation

21 June 2018

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5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations

21 June 2018

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5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging

21 June 2018

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Global 5-hydroxymethylcytosine content is significantly reduced in tissue stem/progenitor cell compartments and in human cancers.

21 June 2018

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Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development

21 June 2018

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PRC2 complexes with JARID2, MTF2, and esPRC2p48 in ES cells to modulate ES cell pluripotency and somatic cell reprogramming

21 June 2018

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Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain

21 June 2018

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Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells

21 June 2018

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5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

21 June 2018

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Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

21 June 2018

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TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

21 June 2018

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Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

21 June 2018

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Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.

21 June 2018

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DNA methylation and demethylation in mammals

21 June 2018

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Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability

21 June 2018

1 reference

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The Polycomb complex PRC2 and its mark in life

21 June 2018

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Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

21 June 2018

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

21 June 2018

1 reference

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Nucleosome-interacting proteins regulated by DNA and histone methylation

21 June 2018

1 reference

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Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes

21 June 2018

1 reference

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Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

21 June 2018

1 reference

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Polycomb-like 2 associates with PRC2 and regulates transcriptional networks during mouse embryonic stem cell self-renewal and differentiation

21 June 2018

1 reference

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Jarid2 and PRC2, partners in regulating gene expression

21 June 2018

1 reference

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JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Mechanisms of polycomb gene silencing: knowns and unknowns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Roles of the EZH2 histone methyltransferase in cancer epigenetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Genome-scale DNA methylation maps of pluripotent and differentiated cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

The polycomb group protein Suz12 is required for embryonic stem cell differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Polycomb/Trithorax response elements and epigenetic memory of cell identity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Beta-catenin inversely regulates vascular endothelial growth factor-D mRNA stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Chromatin modification and epigenetic reprogramming in mammalian development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Genomic imprinting: parental influence on the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

The DNA methyltransferases of mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Metabolism unhinged: IDH mutations in cancer.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-8-R91

Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-8-R91

The presence of 5-hydroxymethylcytosine at the gene promoter and not in the gene body negatively regulates gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-8-R91

Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053938

Quantum nonlinear optics with single photons enabled by strongly interacting atoms

30 October 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2013-14-8-R91

21 January 2018

Identifiers

DOI

10.1186/GB-2013-14-8-R91

1 reference

Dimensions Publication ID

29 July 2017

1013902909

0 references

Fatcat ID

release_o2vheukvrnce3fmjat4u46pj7u

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/o2vheukvrnce3fmjat4u46pj7u

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4053938

1 reference

29 July 2017

1 reference