Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding (Q34750390)

4 August 2017

Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding (English)

1 reference

4 August 2017

Jared M Schrader

1

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author name string

Stephen J Chapman

series ordinal

2

1 reference

PubMed ID

21402928

4 August 2017

Olke C Uhlenbeck

series ordinal

3

1 reference

PubMed ID

21402928

4 August 2017

language of work or name

English

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publication date

14 March 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

1 reference

4 August 2017

108

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4 August 2017

13

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4 August 2017

5215-5220

1 reference

pH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA.

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

The Mechanism for Activation of GTP Hydrolysis on the Ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Thermodynamic and kinetic framework of selenocysteyl-tRNASec recognition by elongation factor SelB

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Evolution of amber suppressor tRNAs for efficient bacterial production of proteins containing nonnatural amino acids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

What recent ribosome structures have revealed about the mechanism of translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Fidelity at the molecular level: lessons from protein synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Slow peptide bond formation by proline and other N-alkylamino acids in translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Different aa-tRNAs are selected uniformly on the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Translation at the single-molecule level

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

[3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

The 51-63 base pair of tRNA confers specificity for binding by EF-Tu

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Anticodon-dependent conservation of bacterial tRNA gene sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

An active role for tRNA in decoding beyond codon:anticodon pairing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

The tRNA specificity of Thermus thermophilus EF-Tu

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Fidelity of aminoacyl-tRNA selection on the ribosome: kinetic and structural mechanisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

7 July 2018

EF-Tu, a GTPase odyssey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Recognition of the universally conserved 3'-CCA end of tRNA by elongation factor EF-Tu

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Many of the conserved nucleotides of tRNA(Phe) are not essential for ternary complex formation and peptide elongation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Codon-dependent conformational change of elongation factor Tu preceding GTP hydrolysis on the ribosome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Relative affinities of all Escherichia coli aminoacyl-tRNAs for elongation factor Tu-GTP

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

The Elongation Factor EF-Tu and Its Two Encoding Genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Kinetic studies of Escherichia coli elongation factor Tu-guanosine 5'-triphosphate-aminoacyl-tRNA complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Ternary complexes of Escherichia coli aminoacyl-tRNAs with the elongation factor Tu and GTP: thermodynamic and structural studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Effects of nucleotide- and aurodox-induced changes in elongation factor Tu conformation upon its interactions with aminoacyl transfer RNA. A fluorescence study.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

A functional pseudoknot in 16S ribosomal RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3069205

Predicting the binding affinities of misacylated tRNAs for Thermus thermophilus EF-Tu.GTP.

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Exploring the specificity of bacterial elongation factor Tu for different tRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Comparison of the global structure and dynamics of native and unmodified tRNAval.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

tRNA selection and kinetic proofreading in translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Single atom modification (O-->S) of tRNA confers ribosome binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Binding efficiency of elongation factor Tu to tRNAs charged with nonnatural fluorescent amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

Directed mutagenesis identifies amino acid residues involved in elongation factor Tu binding to yeast Phe-tRNAPhe

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

A simple structural feature is a major determinant of the identity of a transfer RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1102128108

The effect of mutations in EF-Tu on its affinity for tRNA as measured by two novel and independent methods of general applicability

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21402928

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1102128108

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference

PubMed ID

21402928