Osmolyte-induced perturbations of hydrogen bonding between hydration layer waters: correlation with protein conformational changes (Q35968218)

11 August 2017

Osmolyte-induced perturbations of hydrogen bonding between hydration layer waters: correlation with protein conformational changes (English)

1 reference

11 August 2017

Feng Guo

1

1 reference

11 August 2017

Joel M Friedman

series ordinal

2

1 reference

11 August 2017

language of work or name

English

0 references

publication date

1 December 2009

1 reference

Journal of Physical Chemistry B

11 August 2017

1 reference

11 August 2017

113

1 reference

11 August 2017

52

1 reference

11 August 2017

16632-16642

1 reference

Effects of cell volume regulating osmolytes on glycerol 3-phosphate binding to triosephosphate isomerase

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Protein folding is slaved to solvent motions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Water dynamics in the hydration layer around proteins and micelles.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Temperature excursion infrared (TEIR) spectroscopy used to study hydrogen bonding between water and biomolecules.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Compatible and counteracting solutes: protecting cells from the Dead Sea to the deep sea.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Kosmotropes and chaotropes: modelling preferential exclusion, binding and aggregate stability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The conformational free-energy map for solvated neocarrabiose

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: a chemical chaperone at atomic resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Unifying features in protein-folding mechanisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Myoglobin: the hydrogen atom of biology and a paradigm of complexity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The molecular basis for the chemical denaturation of proteins by urea

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: a model system for analysis of solute effects on protein processes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Thermodynamic binding and site occupancy in the light of the Schellman exchange concept

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Slaving: solvent fluctuations dominate protein dynamics and functions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Ultrafast surface hydration dynamics and expression of protein functionality: alpha -Chymotrypsin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Protein hydration, thermodynamic binding, and preferential hydration

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Modulation of globular protein functionality by weakly interacting cosolvents

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Hydration at the surface of the protein Monellin: dynamics with femtosecond resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Hydration, slaving and protein function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Protein-water interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The molecular mechanism of stabilization of proteins by TMAO and its ability to counteract the effects of urea

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Femtosecond dynamics of rubredoxin: tryptophan solvation and resonance energy transfer in the protein.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Enhancement by Mg2+ of domain specificity in Ca2+-dependent interactions of calmodulin with target sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Ligand binding and thermodynamic stability of a multidomain protein, calmodulin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Stabilization against thermal inactivation promoted by sugars on enzyme structure and function: why is trehalose more effective than other sugars?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Directed evolution of a thermostable esterase.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Osmolyte-driven contraction of a random coil protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Chemical denaturation: potential impact of undetected intermediates in the free energy of unfolding and m-values obtained from a two-state assumption

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Macromolecules and water: probing with osmotic stress

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The control of protein stability and association by weak interactions with water: how do solvents affect these processes?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Living with water stress: evolution of osmolyte systems

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

A new basis for interpreting the circular dichroic spectra of proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Protein denaturation. C. Theoretical models for the mechanism of denaturation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

A thermodynamic approach to the problem of stabilization of globular protein structure: a calorimetric study

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Gd3+ vibronic side band spectroscopy. New optical probe of Ca2+ binding sites applied to biological macromolecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The Energy Landscapes and Motions of Proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Environment affects amino acid preference for secondary structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Hydration of oligosaccharides: anomalous hydration ability of trehalose

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Water as ligand: preferential binding and exclusion of denaturants in protein unfolding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Counteraction of urea destabilization of protein structure by methylamine osmoregulatory compounds of elasmobranch fishes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Lanthanides as probes for calcium in biological systems

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Combined electrostatics and hydrogen bonding determine intermolecular interactions between polyphosphoinositides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The Hofmeister series: salt and solvent effects on interfacial phenomena

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Engineering the independent folding of the subtilisin BPN' prodomain: analysis of two-state folding versus protein stability.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Determination of the secondary structures of proteins by circular dichroism and optical rotatory dispersion

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Vibrational spectroscopy in the ultraviolet via Gd3+ fluorescence: application to biological systems

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Solvent denaturation and stabilization of globular proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Conformational dependence of hemoglobin reactivity under high viscosity conditions: the role of solvent slaved dynamics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

A computational study of hydration, solution structure, and dynamics in dilute carbohydrate solutions

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Tetrahedral order in homologous disaccharide-water mixtures

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Impact of urea on water structure: a clue to its properties as a denaturant?

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Hydrogen Exchange Kinetics of RNase A and the Urea:TMAO Paradigm

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Why is trehalose an exceptional protein stabilizer? An analysis of the thermal stability of proteins in the presence of the compatible osmolyte trehalose

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

The dominant interaction between peptide and urea is electrostatic in nature: a molecular dynamics simulation study

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Generalized derivation of an exact relationship linking different coefficients that characterize thermodynamic effects of preferential interactions

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Efficacy of macromolecular crowding in forcing proteins to fold

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Fifty years of solvent denaturation.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Impact of preferential interactions on thermal stability and gelation of bovine serum albumin in aqueous sucrose solutions

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Protective role of trehalose in thermal denaturation of yeast pyrophosphatase.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3354986

Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding

24 September 2018

1 reference

12 December 2020

Rare earth metal ions as probes of calcium ion binding sites in proteins. Neodymium(3) acceleration of the activation of trypsinogen

1 reference

12 December 2020

Hydrogen bonding and the cryoprotective properties of glycerol/water mixtures

1 reference

12 December 2020

THE EFFECT OF COMPOUNDS OF THE UREA-GUANIDINIUM CLASS ON THE ACTIVITY COEFFICIENT OF ACETYLTETRAGLYCINE ETHYL ESTER AND RELATED COMPOUNDS

1 reference

12 December 2020

Sucrose reduces the efficiency of protein denaturation by a chaotropic agent

1 reference

12 December 2020

Structure and interaction in aqueous urea-trimethylamine-N-oxide solutions

1 reference

12 December 2020

Structural Origin of the High Affinity of a Chemically Evolved Lanthanide-Binding Peptide

1 reference

12 December 2020

Carbohydrate intramolecular hydrogen bonding cooperativity and its effect on water structure

1 reference

12 December 2020

Trehalose protects yeast pyrophosphatase against structural and functional damage induced by guanidinium chloride

1 reference

12 December 2020

How homogeneous are the trehalose, maltose, and sucrose water solutions? An insight from molecular dynamics simulations

1 reference

12 December 2020

Rare earth metal ions as probes of electrostatic binding sites in proteins

1 reference

12 December 2020

Aqueous urea solutions: structure, energetics, and urea aggregation

1 reference

12 December 2020

Analysis of sugar bioprotective mechanisms on the thermal denaturation of lysozyme from Raman scattering and differential scanning calorimetry investigations

1 reference

12 December 2020

Protein interactions with urea and guanidinium chloride. A calorimetric study

1 reference

12 December 2020

Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process

1 reference

12 December 2020

Dynamics of ligand binding to myoglobin

1 reference

12 December 2020

Thermodynamic stability of annexin V E17G: equilibrium parameters from an irreversible unfolding reaction

1 reference

12 December 2020

Lanthanide-Binding Tags as Versatile Protein Coexpression Probes

1 reference

12 December 2020

Importance of environment in determining secondary structure in proteins

1 reference

12 December 2020

Vibrational frequency shifts as a probe of hydrogen bonds: thermal expansion and glass transition of myoglobin in mixed solvents

1 reference

12 December 2020

Rare earth metal ions as substitutes for the calcium ion in Bacillus subtilis -amylase

1 reference

12 December 2020

Protein stabilization and destabilization by guanidinium salts

1 reference

12 December 2020

Selective binding and solvent denaturation

1 reference

12 December 2020

Evidence of a two-stage thermal denaturation process in lysozyme: a Raman scattering and differential scanning calorimetry investigation

1 reference

12 December 2020

The Hofmeister series and ionic strength

1 reference

12 December 2020

Identifiers

DOI

10.1021/JP9072284

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

19961206

1 reference