Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae (Q36104486)

12 August 2017

Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae (English)

1 reference

Aspergillus westerdijkiae

12 August 2017

object named as

Aspergillus westerdijkiae

1 reference

inferred from title

whole genome sequencing

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Xiaolong Han

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Alolika Chakrabortti

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Jindong Zhu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Jinming Li

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

English

0 references

publication date

15 August 2016

1 reference

12 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

1

1 reference

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12 June 2020

page(s)

633

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

12 June 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

2 October 2017

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Identification of Genes Differentially Expressed Between Ochratoxin-Producing and Non-Producing Strains of Aspergillus westerdijkiae

2 October 2017

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Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

2 October 2017

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Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

2 October 2017

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

2 October 2017

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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

2 October 2017

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Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

2 October 2017

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CD-HIT: accelerated for clustering the next-generation sequencing data

2 October 2017

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Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes

2 October 2017

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2 October 2017

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

2 October 2017

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Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

2 October 2017

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2 October 2017

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Contribution of proteomics to the study of plant pathogenic fungi

2 October 2017

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Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis

2 October 2017

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2 October 2017

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Self versus non-self: fungal cell wall degradation in Trichoderma

2 October 2017

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2 October 2017

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2 October 2017

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Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum

2 October 2017

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The CAZyome of Phytophthora spp.: A comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora

2 October 2017

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Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants.

2 October 2017

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Genome-based characterization of two prenylation steps in the assembly of the stephacidin and notoamide anticancer agents in a marine-derived Aspergillus sp

2 October 2017

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Recent advancements in the biosynthetic mechanisms for polyketide-derived mycotoxins

2 October 2017

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FASconCAT: Convenient handling of data matrices

2 October 2017

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Fungal LysM effectors: extinguishers of host immunity?

2 October 2017

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Assessing the gene space in draft genomes

2 October 2017

1 reference

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Fungal cytochrome P450 database

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

PHI-base update: additions to the pathogen host interaction database

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Detection and quantification of Aspergillus westerdijkiae in coffee beans based on selective amplification of beta-tubulin gene by using real-time PCR.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Ochratoxin A-induced mutagenesis in mammalian cells is consistent with the production of oxidative stress

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Locating proteins in the cell using TargetP, SignalP and related tools

2 October 2017

1 reference

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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

2 October 2017

1 reference

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Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

2 October 2017

1 reference

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Genome sequencing and analysis of Aspergillus oryzae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

2 October 2017

1 reference

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Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

2 October 2017

1 reference

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Fungal secondary metabolism - from biochemistry to genomics

2 October 2017

1 reference

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Gene finding in novel genomes

2 October 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

2 October 2017

1 reference

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Versatile and open software for comparing large genomes

2 October 2017

1 reference

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Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Genome-scale approaches to resolving incongruence in molecular phylogenies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Gene prediction with a hidden Markov model and a new intron submodel

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Secreted proteases from pathogenic fungi

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

2 October 2017

1 reference

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Aflatoxins in spices marketed in Portugal

2 October 2017

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2 October 2017

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A hidden Markov model for predicting transmembrane helices in protein sequences

21 January 2018

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Conditions for Production of Ochratoxin A by Aspergillus Species in a Synthetic Medium

2 October 2017

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Aspergillus steynii and Aspergillus westerdijkiae as potential risk of OTA contamination in food products in warm climates.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

A nonribosomal peptide synthetase-derived iron(III) complex from the pathogenic fungus Aspergillus fumigatus

2 July 2018

1 reference

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Comparative analysis of the biosynthetic systems for fungal bicyclo[2.2.2]diazaoctane indole alkaloids: the (+)/(-)-notoamide, paraherquamide and malbrancheamide pathways

2 July 2018

1 reference

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SMURF: Genomic mapping of fungal secondary metabolite clusters

2 July 2018

1 reference

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A polyketide synthase gene required for ochratoxin A biosynthesis in Aspergillus ochraceus

2 July 2018

1 reference

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A new in vitro method to detect growth and ochratoxin A-producing ability of multiple fungal species commonly found in food commodities.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Alkaloids from the deep-sea-derived fungus Aspergillus westerdijkiae DFFSCS013.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Mechanisms involved in reduction of ochratoxin A produced by Aspergillus westerdijkiae using Debaryomyces hansenii CYC 1244.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Cloning and characterization of novel methylsalicylic acid synthase gene involved in the biosynthesis of isoasperlactone and asperlactone in Aspergillus westerdijkiae.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Ochratoxigenic Aspergillus species on grapes from Chilean vineyards and Aspergillus threshold levels on grapes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

ITS-based detection and quantification of Aspergillus ochraceus and Aspergillus westerdijkiae in grapes and green coffee beans by real-time quantitative PCR.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Identification and purification of metalloprotease from dry grass pea (Lathyrus sativus L.) seeds

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Aspergillus westerdijkiae polyketide synthase gene "aoks1" is involved in the biosynthesis of ochratoxin A.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Phylogenetic analysis of Aspergillus species using DNA sequences from four loci

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Two primer pairs to detect OTA producers by PCR method.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Selective toxicity of ochratoxin A in primary cultures from different brain regions

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986183

Whole genome comparison of theA. fumigatusfamily

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2974-X

Terezines A-D: New Amino Acid-Derived Bioactive Metabolites from the Coprophilous Fungus Sporormiella teretispora

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2974-X

Using RepeatMasker to identify repetitive elements in genomic sequences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2974-X

The genetics of Aspergillus nidulans

21 January 2018

1 reference

12 December 2020

The MEROPS batch BLAST: a tool to detect peptidases and their non-peptidase homologues in a genome

1 reference

12 December 2020

MEROPS: the peptidase database

1 reference

12 December 2020

Ochratoxin A production by Aspergillus westerdijkiae in orange fruit and juice

1 reference

12 December 2020

Whole genome comparison of Aspergillus flavus and A. oryzae

1 reference

12 December 2020

[Ochratoxin A, ubiquitous mycotoxin contaminating human food]

1 reference

12 December 2020

10.1186/S12864-016-2974-X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27527502%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

PubMed publication ID

27527502

1 reference