Computational approaches for interpreting scRNA-seq data (Q36376343)

3 October 2017

4 references

19 September 2019

23 November 2020

28 January 2021

8 April 2021

Computational approaches for interpreting scRNA-seq data (English)

1 reference

biomedical investigative technique

3 October 2017

1 reference

19 September 2019

1 reference

23 November 2020

1 reference

28 January 2021

computational biology

1 reference

8 April 2021

3

Sarah A Teichmann

1 reference

3 October 2017

4

Gozde Kar

1 reference

3 October 2017

2

Valentine Svensson

1 reference

3 October 2017

Raghd Rostom

1

1 reference

3 October 2017

language of work or name

English

0 references

publication date

19 May 2017

1 reference

3 October 2017

1 August 2017

4 references

19 September 2019

23 November 2020

28 January 2021

8 April 2021

5 references

3 October 2017

19 September 2019

23 November 2020

28 January 2021

8 April 2021

591

1 reference

3 October 2017

15

1 reference

3 October 2017

2213-2225

1 reference

Creative Commons Attribution

3 October 2017

4 references

19 September 2019

23 November 2020

28 January 2021

8 April 2021

0 references

describes a project that uses

WGCNA

object named as

WGCNA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

WGCNA

0 references

edgeR

object named as

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference

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28 June 2018

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Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

28 June 2018

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Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq

28 June 2018

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Genetics and immunity in the era of single-cell genomics

28 June 2018

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Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development

28 June 2018

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Wishbone identifies bifurcating developmental trajectories from single-cell data

28 June 2018

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Classification of low quality cells from single-cell RNA-seq data

28 June 2018

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Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells

28 June 2018

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Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

28 June 2018

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OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

28 June 2018

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Robust detection of alternative splicing in a population of single cells

28 June 2018

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28 June 2018

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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

28 June 2018

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SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis

28 June 2018

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Single-cell technologies to study the immune system

28 June 2018

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28 June 2018

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ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

28 June 2018

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Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression

28 June 2018

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Single-cell messenger RNA sequencing reveals rare intestinal cell types

28 June 2018

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BASiCS: Bayesian Analysis of Single-Cell Sequencing Data

28 June 2018

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Single-cell chromatin accessibility reveals principles of regulatory variation

28 June 2018

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

28 June 2018

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Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

28 June 2018

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G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

28 June 2018

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28 June 2018

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Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

28 June 2018

1 reference

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Decoding the regulatory network of early blood development from single-cell gene expression measurements.

28 June 2018

1 reference

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Computational and analytical challenges in single-cell transcriptomics

28 June 2018

1 reference

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Integrated genome and transcriptome sequencing of the same cell

28 June 2018

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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

28 June 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

28 June 2018

1 reference

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Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape

28 June 2018

1 reference

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svaseq: removing batch effects and other unwanted noise from sequencing data

28 June 2018

1 reference

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Normalization of RNA-seq data using factor analysis of control genes or samples

28 June 2018

1 reference

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Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

28 June 2018

1 reference

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Bayesian approach to single-cell differential expression analysis

28 June 2018

1 reference

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Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis

28 June 2018

1 reference

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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

28 June 2018

1 reference

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Validation of noise models for single-cell transcriptomics

28 June 2018

1 reference

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

28 June 2018

1 reference

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

28 June 2018

1 reference

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Quantitative single-cell RNA-seq with unique molecular identifiers

28 June 2018

1 reference

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From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

28 June 2018

1 reference

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Accounting for technical noise in single-cell RNA-seq experiments.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5575496

Single-neuron transcriptome and methylome sequencing for epigenomic analysis of aging.

28 June 2018

1 reference

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Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

28 June 2018

1 reference

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Kraken: a set of tools for quality control and analysis of high-throughput sequence data

28 June 2018

1 reference

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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

28 June 2018

1 reference

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Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data

28 June 2018

1 reference

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Differential analysis of gene regulation at transcript resolution with RNA-seq

28 June 2018

1 reference

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Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

28 June 2018

1 reference

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The sva package for removing batch effects and other unwanted variation in high-throughput experiments

28 June 2018

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A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression

28 June 2018

1 reference

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Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

28 June 2018

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

28 June 2018

1 reference

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WGCNA: an R package for weighted correlation network analysis

28 June 2018

1 reference

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Imaging individual mRNA molecules using multiple singly labeled probes

28 June 2018

1 reference

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Diffusion maps and coarse-graining: A unified framework for dimensionality reduction, graph partitioning, and data set parameterization

28 June 2018

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Adjusting batch effects in microarray expression data using empirical Bayes methods

28 June 2018

1 reference

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Adjustment of systematic microarray data biases

28 June 2018

1 reference

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Reconstructing the temporal ordering of biological samples using microarray data

28 June 2018

1 reference

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Reversed graph embedding resolves complex single-cell trajectories.

28 June 2018

1 reference

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Diffusion pseudotime robustly reconstructs lineage branching.

21 September 2018

1 reference

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The first five years of single-cell cancer genomics and beyond

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5575496

On lines and planes of closest fit to systems of points in space

21 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2F1873-3468.12684

Notes on the Theory of Association of Attributes in Statistics

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2F1873-3468.12684

21 January 2018

Identifiers

DOI

10.1002/1873-3468.12684

1 reference

release_rp6shst2hregnbayztdvovvhvq

3 October 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rp6shst2hregnbayztdvovvhvq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

3 October 2017

1 reference