Specialization and evolution of endogenous small RNA pathways (Q36974244)

17 August 2017

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title

Specialization and evolution of endogenous small RNA pathways (English)

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17 August 2017

2

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17 August 2017

Elisabeth J Chapman

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17 August 2017

1 November 2007

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17 August 2017

Nature Reviews Genetics

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17 August 2017

8

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17 August 2017

884-896

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17 August 2017

11

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https://scigraph.springernature.com/pub.10.1038/nrg2179

17 August 2017

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

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ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation

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A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila

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Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

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A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish.

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L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

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A pathogen-inducible endogenous siRNA in plant immunity

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Distinct expression patterns of natural antisense transcripts in Arabidopsis

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A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes

31 March 2020

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SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis

31 March 2020

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Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

31 March 2020

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microRNA-directed phasing during trans-acting siRNA biogenesis in plants

31 March 2020

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Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

31 March 2020

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A germline-specific class of small RNAs binds mammalian Piwi proteins

31 March 2020

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A novel class of small RNAs bind to MILI protein in mouse testes

31 March 2020

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Developmentally regulated piRNA clusters implicate MILI in transposon control

31 March 2020

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Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline

31 March 2020

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Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome

31 March 2020

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A distinct small RNA pathway silences selfish genetic elements in the germline

31 March 2020

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Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline

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Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways

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A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans.

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Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

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A protein sensor for siRNA asymmetry

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R2D2, a Bridge Between the Initiation and Effector Steps of the Drosophila RNAi Pathway

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Processing of primary microRNAs by the Microprocessor complex

31 March 2020

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One of the two Dicer-like proteins in the filamentous fungi Magnaporthe oryzae genome is responsible for hairpin RNA-triggered RNA silencing and related small interfering RNA accumulation.

31 March 2020

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Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in Neurospora crassa

31 March 2020

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A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase

31 March 2020

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Two classes of endogenous small RNAs in Tetrahymena thermophila

31 March 2020

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The evolution and diversification of Dicers in plants.

31 March 2020

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DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana

31 March 2020

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Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.

31 March 2020

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The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation

31 March 2020

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DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.

31 March 2020

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Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.

31 March 2020

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DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal

31 March 2020

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Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4 and Dicer-like 2, and is compromised by viral-encoded suppressor proteins.

31 March 2020

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Molecular bases of viral RNA targeting by viral small interfering RNA-programmed RISC.

31 March 2020

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Transitivity-dependent and -independent cell-to-cell movement of RNA silencing

31 March 2020

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Virus counterdefense: diverse strategies for evading the RNA-silencing immunity

31 March 2020

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Turnip crinkle virus coat protein mediates suppression of RNA silencing in Nicotiana benthamiana.

31 March 2020

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An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs

31 March 2020

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The coat protein of turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation step

31 March 2020

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RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins

31 March 2020

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Transcriptional silencing of a transgene by RNAi in the soma of C. elegans

31 March 2020

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Distinct populations of primary and secondary effectors during RNAi in C. elegans

31 March 2020

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Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase

31 March 2020

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An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus

31 March 2020

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Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis

31 March 2020

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A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis

31 March 2020

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Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis

31 March 2020

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Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis

31 March 2020

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RNA silencing genes control de novo DNA methylation

31 March 2020

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Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors

31 March 2020

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An RNA-dependent RNA polymerase is required for paramutation in maize

31 March 2020

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A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing

31 March 2020

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The nuclear RNase III Drosha initiates microRNA processing

31 March 2020

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The Drosha-DGCR8 complex in primary microRNA processing

31 March 2020

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TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing

31 March 2020

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TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing

31 March 2020

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Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells

31 March 2020

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Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein

31 March 2020

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Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways

31 March 2020

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Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha

31 March 2020

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Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex

31 March 2020

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Intronic microRNA precursors that bypass Drosha processing

31 March 2020

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The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

31 March 2020

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Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors

31 March 2020

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CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana

31 March 2020

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31 March 2020

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Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.

31 March 2020

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The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.

31 March 2020

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Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body

31 March 2020

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DICER-LIKE1: blind men and elephants in Arabidopsis development

31 March 2020

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The dsRNA-binding protein DRB4 interacts with the Dicer-like protein DCL4 in vivo and functions in the trans-acting siRNA pathway

31 March 2020

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Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

31 March 2020

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Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs

31 March 2020

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Argonaute2 is the catalytic engine of mammalian RNAi

31 March 2020

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Purified Argonaute2 and an siRNA form recombinant human RISC

31 March 2020

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Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs

31 March 2020

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Slicer and the argonautes

31 March 2020

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Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.

31 March 2020

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Biochemical specialization within Arabidopsis RNA silencing pathways

31 March 2020

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Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.

31 March 2020

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The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.

31 March 2020

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Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance

31 March 2020

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Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense

31 March 2020

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Sorting of Drosophila small silencing RNAs

31 March 2020

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Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1.

31 March 2020

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Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi

31 March 2020

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Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing

31 March 2020

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A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal

31 March 2020

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On the role of RNA amplification in dsRNA-triggered gene silencing

31 March 2020

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Knocking out the Argonautes

31 March 2020

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Genomic regulation of transposable elements in Drosophila.

31 March 2020

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Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways

31 March 2020

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Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster

31 March 2020

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Control of translation and mRNA degradation by miRNAs and siRNAs

31 March 2020

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RNA-guided DNA deletion in Tetrahymena: an RNAi-based mechanism for programmed genome rearrangements

31 March 2020

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Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena

31 March 2020

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RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena

31 March 2020

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Two classes of short interfering RNA in RNA silencing

31 March 2020

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Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication

31 March 2020

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The role of RNA interference in heterochromatic silencing

31 March 2020

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MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline

31 March 2020

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Heterochromatin revisited

31 March 2020

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Epigenetic regulation of centromere formation and kinetochore function.

31 March 2020

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Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

31 March 2020

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RNA polymerase IV directs silencing of endogenous DNA.

31 March 2020

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Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

31 March 2020

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The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center

31 March 2020

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An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.

31 March 2020

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Gardening the genome: DNA methylation in Arabidopsis thaliana

31 March 2020

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RNAi-mediated targeting of heterochromatin by the RITS complex

31 March 2020

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RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production

31 March 2020

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Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

31 March 2020

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Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome

31 March 2020

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RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing

31 March 2020

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Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

31 March 2020

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Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs

31 March 2020

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

31 March 2020

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miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii

31 March 2020

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A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii

31 March 2020

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Mutations that lead to reiterations in the cell lineages of C. elegans

31 March 2020

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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

31 March 2020

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MicroRNA function in animal development

31 March 2020

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The diverse functions of microRNAs in animal development and disease

31 March 2020

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Primate microRNAs miR-220 and miR-492 lie within processed pseudogenes

31 March 2020

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Mammalian microRNAs derived from genomic repeats

31 March 2020

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Origin and evolution of human microRNAs from transposable elements.

31 March 2020

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The expansion of the metazoan microRNA repertoire

31 March 2020

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A family of human microRNA genes from miniature inverted-repeat transposable elements

31 March 2020

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RNA polymerase III transcribes human microRNAs

31 March 2020

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Alu elements within human mRNAs are probable microRNA targets

31 March 2020

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

31 March 2020

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

31 March 2020

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Evolution of microRNAs located within Hox gene clusters

31 March 2020

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Molecular evolution of a microRNA cluster

31 March 2020

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Evolution of Arabidopsis microRNA families through duplication events

31 March 2020

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Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development

31 March 2020

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Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.

31 March 2020

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Specific Effects of MicroRNAs on the Plant Transcriptome

31 March 2020

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Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.

31 March 2020

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On the origin and functions of RNA-mediated silencing: from protists to man

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRG2179

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17 August 2017

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PubMed ID

17943195